Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02557 and BPUM_1449
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:05
# Commandline: needle
# -asequence dna-align/BSNT_02557___pyrC.1.24716.seq
# -bsequence dna-align/BPUM_1449___pyrC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02557___pyrC-BPUM_1449___pyrC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02557___pyrC-BPUM_1449___pyrC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02557___pyrC
# 2: BPUM_1449___pyrC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1332
# Identity: 997/1332 (74.8%)
# Similarity: 997/1332 (74.8%)
# Gaps: 90/1332 ( 6.8%)
# Score: 3580.0
#
#
#=======================================
BSNT_02557___ 1 ATGTCATATCTCATTAAAAACGGCTGGATACTAAACGAA--AATGGTGAA 48
|||||.||||||||||||||.||.|..|| ||.||| || |..||||||
BPUM_1449___p 1 ATGTCGTATCTCATTAAAAATGGTTTTAT-CTTAAC-AAGCACAGGTGAA 48
BSNT_02557___ 49 AAA--ACAGAAGCGGATATCCGAGT-GACTGGAGAAACCA-TCACCGCAA 94
||| .|||.| ||||||..|.|| || .||||||...| ||| .||.|
BPUM_1449___p 49 AAAGTGCAGCA--GGATATTAGGGTAGA-AGGAGAAGTGATTCA-AGCGA 94
BSNT_02557___ 95 TCGG-CAAGCTT-------GATGCAACGGATAATGAAACGGTAATTGATG 136
|.|| || ||| ||.| ||||| |||..|||.|||||||
BPUM_1449___p 95 TTGGTCA--CTTAGAAAGAGAAG--ACGGA----GAAGAGGTCATTGATG 136
BSNT_02557___ 137 CAAAAGG----TTTGCTCGTTTCACCTGGGTTTGTTGATCTCCACGTGCA 182
|.||||| ||| ||||||||.||.||..|||||||.||.|||||
BPUM_1449___p 137 CTAAAGGGCTATTT----GTTTCACCAGGATTAATTGATCTGCATGTGCA 182
BSNT_02557___ 183 TTTCAGAGAGCCGGGCGGAGAGAAAAAAGAAACTATTGAAACCGGGGCCA 232
|||.||||||||.||||||||||||||.|||||.||||||||.||..|.|
BPUM_1449___p 183 TTTAAGAGAGCCAGGCGGAGAGAAAAAGGAAACGATTGAAACAGGCTCTA 232
BSNT_02557___ 233 AAGCGGCGGCACGCGGCGGCTATACTACAGTAGCAGCAATGCCGAATACG 282
|||||||.|||.|.|||||||||||.|||.|.|||||.||||||||||||
BPUM_1449___p 233 AAGCGGCAGCAAGAGGCGGCTATACAACAATTGCAGCGATGCCGAATACG 282
BSNT_02557___ 283 CGGCCGGTTCCTGATACAAAGGAGCAGATGGAATGGGTGCA--AAACAGA 330
||.||.|||||.||||||||.|||||.|||||||||.| || ||.| ||
BPUM_1449___p 283 CGCCCAGTTCCAGATACAAAAGAGCAAATGGAATGGCT-CATGAATC-GA 330
BSNT_02557___ 331 ATTAAAGAAACATCATGCGTCAGAGTTCTTCCATATGCATCCATTACGAT 380
||..||||.||.||.|..||||||||.||.|||||.||.|||||.||.|.
BPUM_1449___p 331 ATCGAAGAGACCTCTTCTGTCAGAGTGCTGCCATACGCCTCCATCACAAC 380
BSNT_02557___ 381 CAGACAAATCGGCGATGAAATGACAAACTTTGAAGCGTTAAAAGAAGCCG 430
.||||||||.||.||.||.||||||.||||||.|||..||||||||||.|
BPUM_1449___p 381 AAGACAAATTGGGGAAGAGATGACAGACTTTGCAGCACTAAAAGAAGCAG 430
BSNT_02557___ 431 GGGCATTTGCTTTTACAGATGACGGCGTTGGTATACAGACAGCAGGCATG 480
|.||.||.|||||||||||||||||.|||||.||.||.||||||||||||
BPUM_1449___p 431 GCGCCTTCGCTTTTACAGATGACGGGGTTGGCATCCAAACAGCAGGCATG 480
BSNT_02557___ 481 ATGTATGAAGCGATGAAACGGGCAGCCGCAA---TTGA-CAAGGCGATTG 526
|||||.||||||||||||..|||| |||| |||| ||| |||||||
BPUM_1449___p 481 ATGTACGAAGCGATGAAAAAGGCA---GCAAGTCTTGATCAA-GCGATTG 526
BSNT_02557___ 527 TTGCACATTGCGAGGACAACTCCTTAATTTACGGAGGAAGCGTACATG-A 575
|.|||||.||.||.||.|||||..|.||||||||||||.||||.|||| |
BPUM_1449___p 527 TGGCACACTGTGAAGATAACTCGCTCATTTACGGAGGATGCGTCCATGAA 576
BSNT_02557___ 576 GGGGACATTCTCCAAAGCGAACGGGCTAAACGGCATACCTTCTGTGTGTG 625
||.|| |||.||.|||||.||.|||.|||||||.|||||.||..|.||||
BPUM_1449___p 577 GGAGA-ATTTTCAAAAGCAAATGGGTTAAACGGAATACCGTCCATTTGTG 625
BSNT_02557___ 626 AATCGGTTCATATTGCCCGCGATGTGCTGCTGGCTGAGGCGGCAAACTGC 675
|||||||.||||||||..|.|||||.||..|.||.||.||.||.|||||.
BPUM_1449___p 626 AATCGGTGCATATTGCAAGAGATGTTCTTTTAGCAGAAGCAGCGAACTGT 675
BSNT_02557___ 676 CATTACCATGTATGCCATATCAGTACAAAAGAATCTGTCAGGGTCGTACG 725
|||||.||||||||.|||||||||||.|||||||||||..|.|||||.||
BPUM_1449___p 676 CATTATCATGTATGTCATATCAGTACGAAAGAATCTGTGCGAGTCGTTCG 725
BSNT_02557___ 726 CGATGCGAAAAAAGCGGGAATCAGAGTGACAGCAGAAGTGTCGCCGCATC 775
||||||.||||||||.||.|||.|.|||||||||||.|||||.|||||||
BPUM_1449___p 726 CGATGCAAAAAAAGCAGGCATCCGCGTGACAGCAGAGGTGTCACCGCATC 775
BSNT_02557___ 776 ATTTGCTGCTT-TGTGATGAGGACATCCCGGGGCTGGACACAAACTATAA 824
|..|||| ||| |||||||..||||||||.||.||.||.|||||||||||
BPUM_1449___p 776 ACCTGCT-CTTATGTGATGCCGACATCCCAGGTCTTGATACAAACTATAA 824
BSNT_02557___ 825 AATGAATCCTCCGCTCCGCAGCGCAGAAGA------CAGAGCTGCTTTAA 868
|||||||||.||||| |||.|.|.|||| | ||| ||..|||
BPUM_1449___p 825 AATGAATCCACCGCT---CAGAGGAAAAGAGGATCGC-GAG--GCACTAA 868
BSNT_02557___ 869 TTGAAGGTCTTTTAGACGGAACAATTGATTTTATTGCAACAGACCATGCA 918
||||.||.||.|||||.|||||.||||||||.||.|||||||||||||||
BPUM_1449___p 869 TTGAGGGGCTGTTAGATGGAACGATTGATTTCATCGCAACAGACCATGCA 918
BSNT_02557___ 919 CCGCATACGGAAGAAGAGAAAAACACAGAA---ATGAAACTGGCGCCATT 965
||||||||.||||||||.||.||| ||| |||.|.|..||.||.||
BPUM_1449___p 919 CCGCATACAGAAGAAGAAAAGAAC---GAAACGATGCAGCGCGCACCTTT 965
BSNT_02557___ 966 CGGAATTGTC-GGCTTAGAAACAGCATTCCCGCTTCTTTACACACACTTT 1014
.|||||.||| ||||| ||||||||.|||||||||||.|||||||..|||
BPUM_1449___p 966 TGGAATAGTCGGGCTT-GAAACAGCGTTCCCGCTTCTGTACACACGATTT 1014
BSNT_02557___ 1015 GTCAAAAATGGCAGCTGGTCGCTGAAGCAGCTGATTGACTACATGACAAT 1064
|||||||..||....|||.|..|.||..|.||..||||.||.|||||.||
BPUM_1449___p 1015 GTCAAAACGGGTGAATGGACATTAAAAGAACTCGTTGATTATATGACGAT 1064
BSNT_02557___ 1065 CAAGCCATGC-GAAGCGTTCGGTCTCCCATATGGAACATTACAAACGGGG 1113
||||||| || ||.||.|||...||.||.|||||||...|..|||..|||
BPUM_1449___p 1065 CAAGCCA-GCAGAGGCCTTCTCCCTTCCTTATGGAAAGCTGGAAAAAGGG 1113
BSNT_02557___ 1114 CAAGCTGCGGACATTACGTTAATCGATTTAGAAAAAGAAGCAGTTATAGA 1163
|||...||.||.||.||..|.||.||||||.|.||||||...|.|||.||
BPUM_1449___p 1114 CAAATCGCTGATATCACACTCATTGATTTAAACAAAGAAATGGCTATCGA 1163
BSNT_02557___ 1164 CAAAGAGACATTTTTATCAAAAGGAAAAAATACACCATT---CA-----A 1205
.|||.|.|..||.||||||||||||.||||||||||.|| || |
BPUM_1449___p 1164 TAAAAAAAGCTTCTTATCAAAAGGACAAAATACACCGTTTGACAAATTGA 1213
BSNT_02557___ 1206 CGGCATCAGCTGCACCGGCTGGCCGGTCGCTACAATTGCGGCAGGGAAGC 1255
|.|.|||| ||.|||||||||...|||.||||..|.|||||..
BPUM_1449___p 1214 CTGTATCA--------GGATGGCCGGTCATGACACTTGCATCTGGGAAAG 1255
BSNT_02557___ 1256 TTGCTTATGAAGAGGGGAGACTTGTCAAATGA 1287
|.|..|||||||||||||||||.||.||||||
BPUM_1449___p 1256 TCGTGTATGAAGAGGGGAGACTAGTAAAATGA 1287
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