Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02539 and BPUM_1437
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:03
# Commandline: needle
# -asequence dna-align/BSNT_02539___ylmE.1.24716.seq
# -bsequence dna-align/BPUM_1437___ylmE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02539___ylmE-BPUM_1437___ylmE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02539___ylmE-BPUM_1437___ylmE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02539___ylmE
# 2: BPUM_1437___ylmE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 742
# Identity: 476/742 (64.2%)
# Similarity: 476/742 (64.2%)
# Gaps: 101/742 (13.6%)
# Score: 1470.0
#
#
#=======================================
BSNT_02539___ 1 TTGCGTGTTGTTGATAATTTACGACATATAAACGAACGAATAAACGAAGC 50
|||..|||....||.|||.|..||||.|||||.||||.||||||||||||
BPUM_1437___y 1 TTGAATGTACGAGAGAATCTCAGACAAATAAATGAACAAATAAACGAAGC 50
BSNT_02539___ 51 ATGTAACAGATCGGGCCGCAGCTCCGATGAAGTTACGGTTATTGCAGTCA 100
||||||.|||.|.||.||.|.|.|.||.||.||..|.||..|.||.||||
BPUM_1437___y 51 ATGTAAAAGAGCCGGTCGAAACCCAGACGATGTATCCGTCGTCGCTGTCA 100
BSNT_02539___ 101 CAAAATATGTATCACCTGAAAGAGCACAGGAGGCAGTAGATGCTGGCATC 150
||||||||||.|||..||||.|||||||.||.||...|||.||.||.||
BPUM_1437___y 101 CAAAATATGTCTCAATTGAACGAGCACAAGAAGCCAAAGAAGCAGGAAT- 149
BSNT_02539___ 151 ACCTGC--CTCGGAGAGAATC--------GGGATGC-GGAACTGCTCCGC 189
..||| .|.||.||.|||| |||.|.| .|||
BPUM_1437___y 150 -TTTGCATTTTGGTGAAAATCGTGACCAAGGGTTACTTGAA--------- 189
BSNT_02539___ 190 AAACAGG-------AATTGATGAAAG--GTAATCCGGAATGGCATTTTAT 230
|||||.| ||..|||||||| .|| |.|||||.||.||
BPUM_1437___y 190 AAACAAGCGTCTATAACCGATGAAAGCATTA------ACTGGCACTTCAT 233
BSNT_02539___ 231 CGGCAGTTTGCAATCAAGAAAAGCAAAATCTGTCGTCAATGCGG----TT 276
|||||||.|.|||.||.||||||.|||||||||| ||.|.| ||
BPUM_1437___y 234 CGGCAGTCTACAAACACGAAAAGTAAAATCTGTC----ATTCAGACTATT 279
BSNT_02539___ 277 TCCTATATCCATTCCCTAGACCGGCTCTCATTAGCGAAAGAAATTGAAAA 326
..|||..|.|||||.||.||..||.|||||.|.|||||.|||||||||||
BPUM_1437___y 280 GACTACTTACATTCGCTCGATAGGATCTCACTTGCGAATGAAATTGAAAA 329
BSNT_02539___ 327 ACGGGCTGAAGGTACTGTACGATGCTTTGTGCAGGTCAATACCTCTCTTG 376
|.|.|..||....||.||.||.||.|||||.||.||.|||||.||.||.|
BPUM_1437___y 330 AAGAGTGGATCACACGGTTCGCTGTTTTGTACAAGTGAATACATCGCTGG 379
BSNT_02539___ 377 AGCCTTCTAAACACGGCATGAAAAAAGAAGAAGTCATTCCATTCATACAG 426
||...||.||.||||||.||.|||..|||||.||.||||||||..|..||
BPUM_1437___y 380 AGGAGTCAAAGCACGGCCTGCAAAGTGAAGACGTGATTCCATTTGTGAAG 429
BSNT_02539___ 427 GAGCTTTCCGGTTTCGAACATATCCTTG---TTGCCGGGCTGATGACAAT 473
.||||..|.|.||||.||.|.| ||| ||||.||.||||||||.||
BPUM_1437___y 430 CAGCTCGCTGATTTCAAAAAGA---TTGAAATTGCTGGACTGATGACGAT 476
BSNT_02539___ 474 GGCTCCGCTGACTGATGATCAAGATCA----GATCAGAAGCTGTTT---- 515
||||||..|.||.|||||||| || |||..|||.|||.||
BPUM_1437___y 477 GGCTCCATTTACAGATGATCA----CACTGTGATACGAAACTGCTTTAAA 522
BSNT_02539___ 516 -CAGGTCGCTGAGAGAACTCCGTGACCAGGTTCAGAAA------------ 552
|| |.|.|.||| .||||.|||
BPUM_1437___y 523 ACA------TTAAAAAAC-----------CTTCAAAAAGAAGTAAAACAT 555
BSNT_02539___ 553 CTGAACCAGCCGAACGCTCCGTGTACTG-AACTGTCGATGGGCATGTCAA 601
||.|||||....||.||.||.||| |.| |..|.||||||||||||||||
BPUM_1437___y 556 CTTAACCAAGTAAATGCACCTTGT-CAGCATTTATCGATGGGCATGTCAA 604
BSNT_02539___ 602 ATGATTTTGAAATTGCAATTGAAGAAGGAGCTACTTATATTAGAATCGGC 651
|||||||||||||.||||||||||||||.||.||.|...||.|.||.|||
BPUM_1437___y 605 ATGATTTTGAAATCGCAATTGAAGAAGGTGCGACATTCGTTCGGATTGGC 654
BSNT_02539___ 652 TCATCGTTAGTCGGAAATGAAACAGGGGGTGTACAGCAATGA 693
||.||..|.||.||||||||||||||.|||| ..|||
BPUM_1437___y 655 TCTTCACTTGTTGGAAATGAAACAGGAGGTG------CGTGA 690
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