Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02522 and BPUM_1419
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:02
# Commandline: needle
# -asequence dna-align/BSNT_02522___ylxX.1.24716.seq
# -bsequence dna-align/BPUM_1419___ylxX.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02522___ylxX-BPUM_1419___ylxX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02522___ylxX-BPUM_1419___ylxX.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02522___ylxX
# 2: BPUM_1419___ylxX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 777
# Identity: 445/777 (57.3%)
# Similarity: 445/777 (57.3%)
# Gaps: 159/777 (20.5%)
# Score: 1118.5
#
#
#=======================================
BSNT_02522___ 1 ---------------------------------------ATGGTCATCTT 11
|||.||||.||
BPUM_1419___y 1 TTGAGGAAAAAGAAGCCTTTACTTAGTTTAACAGTTTTAATGATCATATT 50
BSNT_02522___ 12 CGGCCTGATGATATCTGTTCAGTTTAATTCGTTAAAGCACCCCAAAGTCC 61
.|||.|.|||.|.||..|.||.||.|||||.|||.||.|.|||.||||.|
BPUM_1419___y 51 TGGCATCATGGTCTCCATCCAATTCAATTCCTTACAGAAGCCCGAAGTTC 100
BSNT_02522___ 62 GGGATACAAGAGATATGTGGGATATTAGGGAAGAGCTGACATCAG-AGC- 109
|.|||||..|.|||.|||||||..|.||.||.||..| ||||| |.|
BPUM_1419___y 101 GAGATACTCGTGATGTGTGGGAACTGAGAGAGGATTT---ATCAGCATCT 147
BSNT_02522___ 110 AGAAGAAGCAGGAAAAGCTGCTGGCT---------GAAATAAACAAATAT 150
|.|||.| ||||| .|||.| |||||..|.|||||.
BPUM_1419___y 148 AAAAGTA--AGGAA------TTGGATTTATTGAAAGAAATTGATAAATAC 189
BSNT_02522___ 151 GACAAATTGCTGAATAGCTAT--TCGCAAACGAAAGAAAT-GA-CAAAAG 196
|||.|..||||.||.|..||| || |..||.||.|| || ||||||
BPUM_1419___y 190 GACGAGATGCTTAAAAAATATGGTC----ATCAAGGAGATCGATCAAAAG 235
BSNT_02522___ 197 AAACCGCGC---TAAATAATACCTTGCAATCCTTAAAAAAAACAGCCGGC 243
|| ||.| |||..||.||.||..||...||||||.|||..||.||.
BPUM_1419___y 236 AA---GCACAATTAACAAAAACGTTAAAAGATTTAAAAGAAAAGGCTGGT 282
BSNT_02522___ 244 ATGACCGATATAACAGGTAGCGGA----ATTGTCATTACGATTTCCCCGC 289
.|.|| |.||..||.||.||| ||||..|||...|||||.|.||
BPUM_1419___y 283 TTTAC----AGAAGTGGAAGGGGAGGGGATTGAAATTGAAATTTCTCAGC 328
BSNT_02522___ 290 TTTTTTCTGAAAG---CTTAAC--AGGAGAGCCGATCGAAAATCCGCCTC 334
||||||| .||| ||||.| ||.|||...|| |||||...||.|
BPUM_1419___y 329 TTTTTTC--CAAGGACCTTACCGGAGAAGAAGTGA---AAAATATCCCAC 373
BSNT_02522___ 335 CGGATTTGCTGAAAAAGCTGATAAATGAACTCAACTCCTA----CGGTGC 380
|.|||.|.|||||||||.|.||.||.|||..||| || .||.||
BPUM_1419___y 374 CTGATCTTCTGAAAAAGTTAATTAACGAAGCCAA----TATGTTTGGGGC 419
BSNT_02522___ 381 AGAGCATATCTCGATTAATGAGCGAAGAGTTGTGAATCATACA---GTCA 427
|.|.|||||.||.||||||||.||..| |||||.|.||||| ||.|
BPUM_1419___y 420 AAAACATATTTCTATTAATGATCGCCG---TGTGATTAATACAAGTGTGA 466
BSNT_02522___ 428 TCAGAGATATAAACGGCACTACAAAAATAGACGGATACGCCCTTGA---C 474
|..|||||||.||.|||||.||||||||.||.||.|||..|.|.|| .
BPUM_1419___y 467 TTCGAGATATTAATGGCACGACAAAAATGGATGGCTACAGCTTAGATAGT 516
BSNT_02522___ 475 GATTA--TCCTTTAACAGTAAAAGTGCTTGCCAAAGATCCGGACATGTTA 522
|||.| || |.||.||||| ||.|||...|..|..|.||||..|||
BPUM_1419___y 517 GATGAAGTC----ACCATTAAAA-TGATTGGTGAGCAGGCCGACAAATTA 561
BSNT_02522___ 523 CACAGCAGAGTGAAGGGGTCAGGCCTTGAGGATCTT-TTTGCATCTG--A 569
.|||||.|..|.||.|..||||...|||..|| ||| ||||| ||.| |
BPUM_1419___y 562 TACAGCCGTTTAAATGTATCAGATATTGGTGA-CTTGTTTGC-TCAGGAA 609
BSNT_02522___ 570 AAATTTAGC---ATTAAAAGCCGGTAAATCTGA--AAGCAAACTAATATT 614
||.||.||| |.||.||||| |.|.|| ||..|||.|.|| ||
BPUM_1419___y 610 AACTTCAGCTTGAGTATAAGCC-----AGCCGAAGAAAAAAATTCAT-TT 653
BSNT_02522___ 615 AAAAGCATATGACAGACCACTGGACGTACAAC-AGCTGAAACTGCT---- 659
|||||||||||||.|..||.|..|.||| ||| |..||||.|..||
BPUM_1419___y 654 AAAAGCATATGACGGTGCAATTCAAGTA-AACGAATTGAAGCCTCTTGAC 702
BSNT_02522___ 660 ----TAAAGACTGA------------- 669
||||| ||
BPUM_1419___y 703 GATGTAAAG---GAGGGGAAATCTTAA 726
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