Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02514 and BPUM_1414
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:01
# Commandline: needle
# -asequence dna-align/BSNT_02514___spoVE.1.24716.seq
# -bsequence dna-align/BPUM_1414___spoVE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02514___spoVE-BPUM_1414___spoVE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02514___spoVE-BPUM_1414___spoVE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02514___spoVE
# 2: BPUM_1414___spoVE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1126
# Identity: 850/1126 (75.5%)
# Similarity: 850/1126 (75.5%)
# Gaps: 38/1126 ( 3.4%)
# Score: 3209.0
#
#
#=======================================
BSNT_02514___ 1 GTGTCGATTGCTTTGACTACTAAAAAAACATCGCCTGATTTGTTATTGGT 50
|||||.|.|||.|||||.||.||.|||||.||..|.||
BPUM_1414___s 1 ------------TTGACGAATAAGAAAACTTCTCCGGATTTTTTGCTTGT 38
BSNT_02514___ 51 CATCATTACGTTATTATTATTAACAATCGGATTAATTATGGTGTACAGTG 100
..|||||||||||.|.|||||.||.||.||.|||||||||||||||||.|
BPUM_1414___s 39 TGTCATTACGTTACTTTTATTGACGATTGGTTTAATTATGGTGTACAGCG 88
BSNT_02514___ 101 CGAGTGCGGTATGGGCGGAT--TATAAATTTGACGACTCATTCTTTTTCG 148
|.|||||.||.||||| || |||||||||||.||.||.||.|.|||.|
BPUM_1414___s 89 CTAGTGCAGTGTGGGC--ATCGTATAAATTTGATGATTCGTTTTATTTTG 136
BSNT_02514___ 149 CGAAACGGCAGCTTTTGTTTGCGGGAATCGGCGTCATTGCTATGTTTTTT 198
|.|||.|.|||||.||||||||.||||||||.||.||.||.||||||||.
BPUM_1414___s 137 CAAAAAGACAGCTGTTGTTTGCCGGAATCGGAGTTATCGCAATGTTTTTC 186
BSNT_02514___ 199 ATCATGAATGTCGATTATTGGACTTGGAGGACATGGTCCAA-------AT 241
||.|||...||||||||||||||.|||.||||.|||||.|| ||
BPUM_1414___s 187 ATTATGCGAGTCGATTATTGGACGTGGCGGACTTGGTCAAAGATATTGAT 236
BSNT_02514___ 242 TGCTGATGGTTATCTGCTTTTTCCTTCTGGTGCTTGTTTTGATACCGGGC 291
||||| |.||.|||.|||||.||.|||||||..|.||.||.|||
BPUM_1414___s 237 TGCTG-------TTTGTTTTCTCCTTTTGCTGCTTGTACTTATTCCTGGC 279
BSNT_02514___ 292 GTCGGAATGGTGCGGAACGGTTCAAGAAGCTGGATCGGAGTCGGAGCATT 341
.||||.||||.|.|.||.||.|||||||||||||||||.|||||.||.||
BPUM_1414___s 280 ATCGGTATGGAGAGAAATGGATCAAGAAGCTGGATCGGTGTCGGTGCGTT 329
BSNT_02514___ 342 CAGCATACAGCCTTCAGAGTTTATGAAGCTTGCGATGATTGCATTCCTTG 391
.||.||.|||||.||.||.|||||||||||||||||||||||.||.||||
BPUM_1414___s 330 TAGTATTCAGCCCTCTGAATTTATGAAGCTTGCGATGATTGCGTTTCTTG 379
BSNT_02514___ 392 CTAAATTTCTCTCTGAAAAACAAAAAAACATCACATCGTT---CAGACGG 438
|.|||||..|.|||||||||||||||||.||||||||.|| ||.|
BPUM_1414___s 380 CAAAATTCTTATCTGAAAAACAAAAAAATATCACATCCTTTCGCAAA--- 426
BSNT_02514___ 439 GGGTTCGTCCCTGCACTTGGCATCGTGTTTTCAGCATTTTTGATTATCAT 488
||.||.|.|||.||..|.|||||.||.|||||.||||||...||.||.||
BPUM_1414___s 427 GGTTTTGCCCCAGCTTTAGGCATTGTATTTTCTGCATTTGCCATCATTAT 476
BSNT_02514___ 489 GTGCCAGCCTGACCTCGGAACGGGGACAGTAATGGTCGGAACTTGTATTG 538
|...||.||.||.||.|||||.||.||.||||||||.|||||.||||||.
BPUM_1414___s 477 GCTTCAACCAGATCTGGGAACAGGAACGGTAATGGTTGGAACCTGTATTA 526
BSNT_02514___ 539 TCATGATTTTTGTAGCCGGCGCGCGGATCGCCCATTTCGTCTTTCTCGGA 588
|||||||.|||||..|.||.|||.|.||.||.||.||..|.||||||||.
BPUM_1414___s 527 TCATGATATTTGTTTCAGGTGCGAGAATTGCTCACTTTATATTTCTCGGT 576
BSNT_02514___ 589 CTGATCGGCCTCAGCGGATTTGTCGGGCTCGTACTATCAGCTCCATATCG 638
||.||.||.||||||||.||||.||.|||.||..|||||||.||.||.||
BPUM_1414___s 577 CTTATAGGGCTCAGCGGGTTTGCCGCGCTTGTCTTATCAGCACCCTACCG 626
BSNT_02514___ 639 GATTAAGCGGATTACCTCATACTTAAATCCATGGGAAGACCCGCTCGGAA 688
.||.||.||.|||||.||||||||||||||.||||||||.|||||.||.|
BPUM_1414___s 627 AATAAAACGAATTACATCATACTTAAATCCTTGGGAAGATCCGCTGGGCA 676
BSNT_02514___ 689 GCGGATTTCAGATCATTCAATCGCTT-TATGCAGTGGGGCCCGGCGGGTT 737
|.||.|||||.||.|||||.|| ||| ||.||.||.||.||.||.||..|
BPUM_1414___s 677 GTGGGTTTCAAATTATTCAGTC-CTTATACGCTGTTGGTCCAGGTGGTCT 725
BSNT_02514___ 738 GTTTGGAATGGGGCTCGGACAAAGCAGACAGAAATTCTTTTATCTGCCTG 787
|||.||||||||.||.||.|||||.||.||.||||||||.|||.|.||||
BPUM_1414___s 726 GTTCGGAATGGGACTTGGTCAAAGTAGGCAAAAATTCTTCTATTTACCTG 775
BSNT_02514___ 788 AGCCGCAAACAGACTTTATTTTCGCCATCTTGTCAGAGGAGCTGGGCTTT 837
||||.|||||.|||||.||.||.||.||.|||||.||.|||||.||||||
BPUM_1414___s 776 AGCCCCAAACGGACTTCATCTTTGCGATATTGTCTGAAGAGCTTGGCTTT 825
BSNT_02514___ 838 ATCGGGGGAACACTTATTTTGCTCCTCTTCAGCGTCCTGCTGTGGAGAGG 887
||.||.|||.||||||||||.||||||||.||.||.||..|.||||||||
BPUM_1414___s 826 ATAGGAGGATCACTTATTTTACTCCTCTTTAGTGTTCTATTATGGAGAGG 875
BSNT_02514___ 888 AATCAGAATTGCGCTTGGTGCCCCTGATCTGTACGGAAGCTTTGTCGCAG 937
.||..||||.||.|||||.||.||.||..|.||.||.||.||..|.||||
BPUM_1414___s 876 CATACGAATAGCACTTGGAGCGCCAGACTTATATGGGAGTTTCCTAGCAG 925
BSNT_02514___ 938 TCGGTATTATTTCAATGATTGCCATTCAAGTCATGATCAATATCGGCGTA 987
|.|||||||||||||||.|||||||||||||.|||||.||.||||..||.
BPUM_1414___s 926 TTGGTATTATTTCAATGGTTGCCATTCAAGTAATGATTAACATCGCAGTT 975
BSNT_02514___ 988 GTCACGGGCCTGATTCCTGTAACAGGCATCACGCTCCCGTTTCTGAGCTA 1037
|||||.||.|||||||||||.|||||.||.||||||||.||.||.||.||
BPUM_1414___s 976 GTCACTGGACTGATTCCTGTGACAGGTATTACGCTCCCATTCCTTAGTTA 1025
BSNT_02514___ 1038 CGGAGGCTCTTCATTGACTCTAATGCTGATGGCAGTTGGTGTGCTGCTGA 1087
.||.|||||.||||||||..|||||||||||||..||||.||.||.||||
BPUM_1414___s 1026 TGGCGGCTCATCATTGACATTAATGCTGATGGCGATTGGCGTACTTCTGA 1075
BSNT_02514___ 1088 ATGTAAGCCGCTACTCGAGGTATTAA 1113
||||.|||.|.|||.|.||.|||||.
BPUM_1414___s 1076 ATGTCAGCAGGTACGCAAGATATTAG 1101
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