Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02513 and BPUM_1413
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:01
# Commandline: needle
# -asequence dna-align/BSNT_02513___murD.1.24716.seq
# -bsequence dna-align/BPUM_1413___murD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02513___murD-BPUM_1413___murD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02513___murD-BPUM_1413___murD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02513___murD
# 2: BPUM_1413___murD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1428
# Identity: 984/1428 (68.9%)
# Similarity: 984/1428 (68.9%)
# Gaps: 144/1428 (10.1%)
# Score: 3268.5
#
#
#=======================================
BSNT_02513___ 1 GTGGAAAATGAT-CAATTTTTACAGAAAC-AGCATTTTTTAATCCTTGGG 48
|.|||.|.||| |||.|.||| |.|||| |.|||.|..||.|..|.||.
BPUM_1413___m 1 -TTGAATAAGATGCAAATGTTA-AAAAACGAACATGTACTAGTATTAGGT 48
BSNT_02513___ 49 CTTGCGAAAAGCGGATATGCGGCGGCCTCCATTCTTCATGAAAAAGGCAT 98
|||||.|||||||||||||||||.||.||.||||||||||||.|.||..|
BPUM_1413___m 49 CTTGCTAAAAGCGGATATGCGGCAGCTTCAATTCTTCATGAACATGGAGT 98
BSNT_02513___ 99 TTATGTTGCAGTCAATGACCAAAAGCCTTTTGAAGAAAATGAACCGGCAC 148
..||||..|.||.|||||.|||||.||.||||||||.||.|||||.||.|
BPUM_1413___m 99 AAATGTGACGGTAAATGATCAAAAACCATTTGAAGAGAACGAACCTGCTC 148
BSNT_02513___ 149 AAAAGCTTTCTGAAAAAGGAATCGAAGTTGTTTGCGG-AGAGCATCCAGT 197
|....|||||||||||.||.||.||.||.|||||.|| || .|||||..|
BPUM_1413___m 149 AGCTACTTTCTGAAAAGGGGATTGATGTCGTTTGTGGCAG-CCATCCTCT 197
BSNT_02513___ 198 TTCTCTGTTCGATCAGCATCAA---ATCACGATTCTGATCAAAAACCCGG 244
|..|.|.||||| || ||.|| ||.||.|||.|.||.|||||.||.|
BPUM_1413___m 198 TCGTATATTCGA--AG-ATAAAGACATTACAATTTTAATTAAAAATCCAG 244
BSNT_02513___ 245 GAATTCCTTATGAAAATATTATGGTTCAGGAAGCG-------GAGAAAAG 287
|.|||||||||||||||.|.||||||||.|||||| |..||
BPUM_1413___m 245 GTATTCCTTATGAAAATGTGATGGTTCAAGAAGCGCTTCGCCGTCAA--- 291
BSNT_02513___ 288 AGGTATTCCGGTTTGGACGGAAATTGAGCTCGC-------TTACTACCTG 330
|||||.||||||||.|||||.||..|.|| ||| ||||
BPUM_1413___m 292 ----ATTCCAGTTTGGACTGAAATAGAATTAGCGTATCATTTA--ACCT- 334
BSNT_02513___ 331 ACCAGCGCCAAGTTTATCGGGATTACCGGATCGAACGGTAAAACGACCAC 380
||.|.|| .|||||.||||||||.||||||||.||.|||||.||.||
BPUM_1413___m 335 --CATCTCC--TTTTATTGGGATTACTGGATCGAATGGAAAAACCACTAC 380
BSNT_02513___ 381 GACAACGCTAATTTACGAAATGCTCAAAGCTGACTCGCAAAAAGCACTGA 430
.||.||..|||||||.||||||||.|||...|||...||||||.||.|..
BPUM_1413___m 381 CACGACATTAATTTATGAAATGCTGAAAAAAGACAGCCAAAAAACATTAG 430
BSNT_02513___ 431 TTGCCGGAAACATCGGCACAGTCGCAAGTGAGGTTGC--CTATCATGCTG 478
|.||.||.||.||.||.|||||.||.|||||.||.|| |.| ||||.|
BPUM_1413___m 431 TGGCTGGTAATATTGGAACAGTTGCCAGTGAAGTCGCTGCAA--ATGCAG 478
BSNT_02513___ 479 ATGGAGATGAATGGATCGTTACCGAACTGTCTTCGTTTCAGCTGATGGGA 528
||||.|||||.||||||||.||.|||||.|||||.||||||.|.||||||
BPUM_1413___m 479 ATGGCGATGAGTGGATCGTAACGGAACTCTCTTCTTTTCAGTTAATGGGA 528
BSNT_02513___ 529 ACACACGCTTTCAGACCGGAAATCAGCCTGATTTTAAATGTATTTGACGC 578
|||...|..||.||||||.||||||||.|.||.||||||.|.|||||.||
BPUM_1413___m 529 ACAGTTGAATTTAGACCGAAAATCAGCTTAATATTAAATATTTTTGATGC 578
BSNT_02513___ 579 CCATCTGGATTATCACCATACGCGCGAAAACTATGAAAAAGCGAAACAGA 628
.|||.|.||.||||||||.||.||.|||.|.|||||||||||.||.||||
BPUM_1413___m 579 ACATTTAGACTATCACCACACTCGTGAAGAATATGAAAAAGCAAAGCAGA 628
BSNT_02513___ 629 AAGTGTACCTTCATCAGACTGCTTCAGATAAAGCCAT--------TGTC- 669
||||.|.|.|.||||| |.||.||| || ||||
BPUM_1413___m 629 AAGTATTCGTACATCA---------ACATGAAG--ATGATATTGCTGTCA 667
BSNT_02513___ 670 --AACCAGGATGATGAAACCGTC-GTGCGT----CTTGCTGAAGCCGGAA 712
|||...|||||| ||.|| || .|| ||.||.||||....||
BPUM_1413___m 668 TTAACTTAGATGAT----CCTTCAGT-TGTAAAACTAGCAGAAGGTTCAA 712
BSNT_02513___ 713 AAGCCGAAATCGTCCCATTTTCAGT--------CAGCAAAAC-----GC- 748
||||..|||..||....||.||||| |||.|.||| ||
BPUM_1413___m 713 AAGCAAAAAAAGTGTTTTTCTCAGTGAAAGAGCCAGTAGAACATGGTGCG 762
BSNT_02513___ 749 ----TTGAACAGGGCGCATATGTA-------AAAG-ACAGTATGATT-AT 785
||.||||.||.||| ||.|| ||.| ||| |||.||| ||
BPUM_1413___m 763 TTTATTCAACATGGTGCA-ATTTACTACATGAATGAACA-TATCATTGAT 810
BSNT_02513___ 786 GTTTAACGGCGAAGCCATTCTTCCTCTGGAAGAGGTTGTGCTGCCCGGTG 835
|| || |.||.|||||.||.||.||||
BPUM_1413___m 811 GT---------AA----------------AGGATGTTGTCCTTCCTGGTG 835
BSNT_02513___ 836 CTCATAACCTGGAGAACATTTTAGCAGCTATTGCAGTTGTGAAAACGGCA 885
..|||||||..||.||||||||.|||||||||...||||||||||..|||
BPUM_1413___m 836 AACATAACCAAGAAAACATTTTGGCAGCTATTTGTGTTGTGAAAAATGCA 885
BSNT_02513___ 886 GG-AGCATCCAATGAGGC---GGTTAAAAAGGTGCTGACAAGCTTTACTG 931
|| .|| ||.|||||.|| .||| .|.||.||.||.|..|||..||
BPUM_1413___m 886 GGTTGC-TCAAATGATGCAATCGTT---CACGTTCTCACGACATTTGGTG 931
BSNT_02513___ 932 GTGTGAAGCACCGCCTCCAATATGT---CACAACTGTGAATGGCCGCAAA 978
|.||||||||.||.||.||||.||| .||||.|..|| |.||.|||
BPUM_1413___m 932 GAGTGAAGCATCGTCTGCAATTTGTAGATACAATTCAGA---GTCGGAAA 978
BSNT_02513___ 979 TTTTATAACGACAGTAAAGCAACAAACATTCTGGCGACAAGCAAGGCGCT 1028
|||||||||||.|||||||||||.||.|||.||||.|||||.||.||..|
BPUM_1413___m 979 TTTTATAACGATAGTAAAGCAACCAATATTTTGGCAACAAGTAAAGCATT 1028
BSNT_02513___ 1029 TTCAGCTTTTGATAAGCCGGTCATTCTGCTTGCGGGCGGACTGGATCGCG 1078
.||||||||.||..|.|||...|||.||.|.||.||.|||||.|||||.|
BPUM_1413___m 1029 GTCAGCTTTCGAACAACCGACTATTTTGTTAGCAGGTGGACTTGATCGAG 1078
BSNT_02513___ 1079 GAAATGGTTTTGATGACTTGAAACCTTATATGAAGCATGTCAAAGCAGTG 1128
|.||||..||||||||.||||||||||.||||||.|||||.||||.|.||
BPUM_1413___m 1079 GCAATGAATTTGATGAATTGAAACCTTTTATGAAACATGTAAAAGGAATG 1128
BSNT_02513___ 1129 CTTACATTTGGCCAGACGGCGCCAAAACTCGAGAAACTCGGCAATGAACT 1178
.|.||||||||..||||.||.||.||..|.|.|||.||.||..|.||.||
BPUM_1413___m 1129 ATCACATTTGGTGAGACTGCACCTAAGTTTGTGAAGCTTGGTGAAGAGCT 1178
BSNT_02513___ 1179 GGGAATACAACATGTCAAACGTGTCGATAATGTTGAACAAGCAGTATCTG 1228
.||||||||.|||||.||||.|||||||||||||||||||||||||.|||
BPUM_1413___m 1179 TGGAATACATCATGTAAAACATGTCGATAATGTTGAACAAGCAGTACCTG 1228
BSNT_02513___ 1229 CGGCGTTTGCGCTCTCAAATGAAGGAGATGTCATCCTGCTGTCACCCGCG 1278
||||||||....|.||..|.||||.|||.||.||..|..|.||.||.||.
BPUM_1413___m 1229 CGGCGTTTAACATATCTGAAGAAGAAGACGTGATTTTATTATCTCCGGCT 1278
BSNT_02513___ 1279 TGTGCGAGCTGGGATCAATTCAAAACATTTGAAGAACGCGGTGACATGTT 1328
|||||.||||||||||||...|||||||||||||||||.||.||||||||
BPUM_1413___m 1279 TGTGCAAGCTGGGATCAACATAAAACATTTGAAGAACGTGGAGACATGTT 1328
BSNT_02513___ 1329 TATAGATGCCGTGCATATGCTTAAGTAA 1356
|.||.|.|||||||||||||||||.|||
BPUM_1413___m 1329 TGTAAACGCCGTGCATATGCTTAAATAA 1356
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