Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02510 and BPUM_1411
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:01
# Commandline: needle
# -asequence dna-align/BSNT_02510___murE.1.24716.seq
# -bsequence dna-align/BPUM_1411___murE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02510___murE-BPUM_1411___murE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02510___murE-BPUM_1411___murE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02510___murE
# 2: BPUM_1411___murE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1597
# Identity: 1064/1597 (66.6%)
# Similarity: 1064/1597 (66.6%)
# Gaps: 227/1597 (14.2%)
# Score: 3317.5
#
#
#=======================================
BSNT_02510___ 1 ------ATGAAACTTACAA-AGCTGCTTACATACTT----------AACA 33
|||||| |||||| |.|||||||||||||| ||||
BPUM_1411___m 1 ATGAAAATGAAA-TTACAAGAACTGCTTACATACTTTAAAAGTGAAAACA 49
BSNT_02510___ 34 ACCGAACCTTCTG-TAAACGACTCACAAGACCCTGAAATAACTTCAATTG 82
| |||| .|| |||||| ||.|.|||||.||.|||||.||||
BPUM_1411___m 50 A-CGAA----TTGATAAACG------AAAATCCTGATATCACTTCCATTG 88
BSNT_02510___ 83 AGATGGACTCCAGGGAAGT-AAAGAAAGGG-AGTCTTTTTGTATGTGTAA 130
|.|||||.||.||.||.|| |||| |||| ||.||||||||.|||.|||
BPUM_1411___m 89 AAATGGATTCAAGAGAGGTGAAAG--AGGGAAGCCTTTTTGTCTGTATAA 136
BSNT_02510___ 131 AAGGGTATACGGTGGATGGCCACGATTTTGCGCAAAAAGCAGTAGAAAA- 179
||||.|||||.||.|||||.||.||||..||..|||||||.|| |||||
BPUM_1411___m 137 AAGGCTATACAGTAGATGGACATGATTACGCTGAAAAAGCGGT-GAAAAG 185
BSNT_02510___ 180 CGGTGCAGCGGCTATTGTGGCAGA---------------AAGAGAGGTCG 214
|||.||.||.||.|||||.||||| ||.||
BPUM_1411___m 186 CGGGGCTGCAGCCATTGTAGCAGAACACCCACTTAACATAACAG------ 229
BSNT_02510___ 215 ATGTGAATGTTCCTGTTATTATTGTCCGGCAGTCACTTCGCGCGCTC--- 261
||||.||.||.|||||||| .|..|||| |||
BPUM_1411___m 230 ------ATGTACCAGTCATTATTGT----GAAACACT-------CTCAAA 262
BSNT_02510___ 262 -AGCGTTT-------TGTCTGATGCGTTTTACGGACAGCCGACGAAGAAG 303
|||..|| |..|||||||||||||.|.||||||.||..|.|||
BPUM_1411___m 263 GAGCACTTGCAAGAATAGCTGATGCGTTTTATGAACAGCCCACTCATAAG 312
BSNT_02510___ 304 CTTCAGCTGATTGGGATAACAGGGACAAACGGCAAAACATCAACGACCCA 353
||..|.||.||||||||.||.||.|||||.||.|||||.|||||.||.||
BPUM_1411___m 313 CTGAATCTCATTGGGATCACTGGTACAAATGGAAAAACCTCAACAACACA 362
BSNT_02510___ 354 CATGGTCGA-----TGAGATTCTGAAAAAAGCGG----GAAAACGCACAG 394
||||.|||| ||| |||.||||||.| |||| ||||
BPUM_1411___m 363 CATGATCGAACAAGTGA-----TGAGAAAAGCCGAAAAGAAA----ACAG 403
BSNT_02510___ 395 GCTTGATCGGTACAATGTACATGAAAATCGGA--GACGAAACACTTCCT- 441
||||.||||||||.|||||.||||||.| || ||.| ||.|.||
BPUM_1411___m 404 GCTTAATCGGTACGATGTATATGAAAGT--GAATGATG----ACATTCTC 447
BSNT_02510___ 442 ---GTTAAAAACACGACTCCGGAAAGCGTCACGCTGCAGAAAACGTTTAA 488
||.|||||.||.||.||.|||||.|||||.||.||||||||||||||
BPUM_1411___m 448 GACGTGAAAAATACCACACCTGAAAGTGTCACACTTCAGAAAACGTTTAA 497
BSNT_02510___ 489 GAAAATGAATGA-CAAGCATGTTGACACTGCAATCATGGAGGTTTCTTCC 537
..|.|||..||| |||| ||||.|||||.||.||||||||.||.||.||.
BPUM_1411___m 498 ACAGATGCTTGATCAAG-ATGTAGACACAGCCATCATGGAAGTATCATCA 546
BSNT_02510___ 538 CA--CGCTTTGTCTTTAGGACGCGTCCATGGCTGTGATTATGATATTGCC 585
|| |.||...|||| ||..|.||.|||||.|||||||||||||||||.
BPUM_1411___m 547 CATGCCCTCCATCTT--GGCAGAGTACATGGATGTGATTATGATATTGCG 594
BSNT_02510___ 586 GTGTTTACGAATTTAACACAGGACCATCTGGACTATCATAAAACGATGGA 635
||.||.||.||..|.||||||||||||||.|||||.||.||.||.|||||
BPUM_1411___m 595 GTTTTCACAAACCTTACACAGGACCATCTTGACTACCACAACACAATGGA 644
BSNT_02510___ 636 TGAGTACCGGCATGCAAAAAGCTTGCTCTTTTCCCAACTTGG-CGGGGCT 684
.||.||....|||||.|||||||||.|.|||||.||.||||| .|.|.||
BPUM_1411___m 645 AGAATATAAACATGCGAAAAGCTTGTTGTTTTCTCAGCTTGGAAGTGCCT 694
BSNT_02510___ 685 TTCA--ACCATGAACATCCAAAGCGTGCCGTCCTGAATGCTGACGATGAG 732
|||| ||.||.|| ||.||||.|||..|..|.|||||.||.||||||
BPUM_1411___m 695 TTCATCACAATAAA---CCGAAGCATGCGATTTTAAATGCAGATGATGAG 741
BSNT_02510___ 733 G---CGAGCGCTTATTTTGAAAAGGTAACAGCTGCGCATATCTCTACAT- 778
| |||| ||||||||||||.||.||.|||||..|..| |||
BPUM_1411___m 742 GCTTCGAG---TTATTTTGAAAAAGTCACTGCTGCTGAAGT-----CATG 783
BSNT_02510___ 779 ACGGA--------ATTAAAAACGATGCTGATGTGATGGCGAAGAACA-TC 819
|||.| |..||||| ||.|||||.|||||.||.||.| ||
BPUM_1411___m 784 ACGTATGCCCTAGAGCAAAAA----GCAGATGTCATGGCAAAAAATATTC 829
BSNT_02510___ 820 AGTATCACTGCAC--AGGG--CACAAGCTTTGATCTCGTGA---CAAACA 862
| .|||| ||| | |||| |.||| ||||||.|.||.| |||.|
BPUM_1411___m 830 A-AATCA-TGC-CGAAGGGAACTCAA--TTTGATTTGGTCACTCCAATC- 873
BSNT_02510___ 863 AAGGCACGAAGCACATCACGATGTCTCTCGTCGGACAATTTAATGTGTAT 912
|||||.|||.|..|.|||.|..|.||||||||..|.||.|||||||||
BPUM_1411___m 874 --GGCACCAAGAAAGTGACGGTTGCCCTCGTCGGGAAGTTCAATGTGTAT 921
BSNT_02510___ 913 AACGTGCTGGCCGCT------GTTGCGACAT-GTATTGCAGCAGGCATAC 955
||..|.||.||.||| ||||.| || |||| |.|||.||.
BPUM_1411___m 922 AATATCCTTGCAGCTGTATCAGTTGGG--ATCGTAT-----CTGGCTTAA 964
BSNT_02510___ 956 CGTTTGAAATCATCACTGAG-GCTGTTGAAGA-ATTGCATGGTGTAAGAG 1003
|.|||||.|..||| .|||| ||..||||||| .||| |.||.||.|.||
BPUM_1411___m 965 CATTTGAGACGATC-GTGAGTGCGATTGAAGAGCTTG-AAGGAGTCAAAG 1012
BSNT_02510___ 1004 GCCGTTTTGAATTGGTCAATCAGC-AGCAGGAGTTTCCTGTCATTGTAGA 1052
||.|.||||||.|.|| ||.|.|| |.||.||.||.||.|||||.||.||
BPUM_1411___m 1013 GCAGATTTGAACTTGT-AAACTGCGATCAAGATTTCCCGGTCATCGTCGA 1061
BSNT_02510___ 1053 CTACGCGCACACACCGGACAGCCTTGAAAATGTGCTGGAGACATGCAGAG 1102
.||||||||.|||||.|||||..|.||||||||.||....||.||.||||
BPUM_1411___m 1062 TTACGCGCATACACCTGACAGTTTAGAAAATGTCCTCACAACGTGTAGAG 1111
BSNT_02510___ 1103 ACATGACGGAAGG-AAAGCTATTTGTCGTTGTCGGCTGCGGAGGAGACAG 1151
|..|.||.||.|| |||..|.|.||| ||..|.||||||||.||.||..|
BPUM_1411___m 1112 AATTAACAGAGGGCAAAATTTTCTGT-GTGATTGGCTGCGGTGGTGATCG 1160
BSNT_02510___ 1152 AGATAAGACGAAGCGCCCGAAAATGGCTAAAATTGCTGTGGAGCTGGCTG 1201
.|||||.||.|||||.||..||||||||.||||.||||||.|....||.|
BPUM_1411___m 1161 TGATAAAACAAAGCGTCCTCAAATGGCTCAAATCGCTGTGAAATATGCAG 1210
BSNT_02510___ 1202 ACGAGCCGATTTTCACGTCAGATAACCCGAGAAGCGAAGATCCTCGCGCG 1251
|.||.||..|.||.||||||||.|||||.|||||||||||||||...||.
BPUM_1411___m 1211 ATGAACCTGTATTTACGTCAGACAACCCAAGAAGCGAAGATCCTTCAGCC 1260
BSNT_02510___ 1252 ATTTTAAGAGATATGGAAGCCGGAGTA-GAGAACGCATACTATCACAGTA 1300
|||||||.||||||||||...||.||| .|| |||||||.|||||.||..
BPUM_1411___m 1261 ATTTTAAAAGATATGGAAAATGGGGTACCAG-ACGCATATTATCATAGCT 1309
BSNT_02510___ 1301 TTGCAAACCGCGAGCAGGCGATCTTTTTCGCAATTGCCAATGCCAAAAAA 1350
|||..||.||..|.||.|||||.||.||.||.|||||||||||.||||||
BPUM_1411___m 1310 TTGTGAATCGGAAACAAGCGATTTTCTTTGCCATTGCCAATGCAAAAAAA 1359
BSNT_02510___ 1351 GGCGACGTTGTCCTCATTGCCGGAAAAGGACATGAAACCTATCA------ 1394
|||||....|||||.||.||.||.|||||.|||||.||||||||
BPUM_1411___m 1360 GGCGATACAGTCCTAATAGCGGGTAAAGGCCATGAGACCTATCAAATTAT 1409
BSNT_02510___ 1395 --GCAGATCGGAAATGAAACTTTCGATTTTGATGATGCTGAAGTAGC-GG 1441
|| |||| ||.| ||.| ||.|||||||||||..||.|.|| |.
BPUM_1411___m 1410 TGGC-GATC--AAGT----CTAT-GACTTTGATGATGCAAAAATTGCTGT 1451
BSNT_02510___ 1442 CGAGAGCCATTGTTGAACTCAATAAGAA---TAAGACGAATTCATAG 1485
.|| .||.|||.|.||.||.||.| || |||
BPUM_1411___m 1452 TGA-CGCTATTTTAGACCTAAACA--AATCTTAA------------- 1482
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