Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02509 and BPUM_1410
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:01
# Commandline: needle
# -asequence dna-align/BSNT_02509___spoVD.1.24716.seq
# -bsequence dna-align/BPUM_1410___spoVD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02509___spoVD-BPUM_1410___spoVD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02509___spoVD-BPUM_1410___spoVD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02509___spoVD
# 2: BPUM_1410___spoVD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1972
# Identity: 1438/1972 (72.9%)
# Similarity: 1438/1972 (72.9%)
# Gaps: 83/1972 ( 4.2%)
# Score: 5124.5
#
#
#=======================================
BSNT_02509___ 1 TTGCGCGTCTCGAATGTAACGGTTAGAAAACGTTTATTATTTGTTTTGCT 50
.||||.||.||||.||||||.||.||||||||.||..|.||.||..||||
BPUM_1410___s 1 GTGCGAGTGTCGAGTGTAACAGTGAGAAAACGATTGCTTTTCGTGCTGCT 50
BSNT_02509___ 51 TTTTGGCGTGATCGTGTTTCTGATCATTGATACAAGGCTGGGGTATGTTC 100
.|||||.||||||.|.|||.|.|||||.|||||.||..|.||.|||||.|
BPUM_1410___s 51 GTTTGGGGTGATCATTTTTTTCATCATAGATACTAGATTAGGATATGTGC 100
BSNT_02509___ 101 AGTTTGTGATGGGCGAAAAACTGACTTCGC-TAGCGAAAGATTCCTGGAG 149
|||||.|.||||||||.||.||||| ..|| ||||.||||||||.|||||
BPUM_1410___s 101 AGTTTATTATGGGCGAGAAGCTGAC-AAGCTTAGCAAAAGATTCATGGAG 149
BSNT_02509___ 150 CCGGAACTTGCCGTTTGAGCCGGAGAGAGGCGAGATTCTGGATCGGAATG 199
..|.|||.|.||.||.||.|||||..||||.||.||..||||.|||||||
BPUM_1410___s 150 TAGAAACCTTCCATTCGAACCGGAACGAGGAGATATCTTGGACCGGAATG 199
BSNT_02509___ 200 GTGTGAAGCTCGCAACAAATAAAAGTGCGCCGACCGTATTCGTCGTGCCG 249
|.||..||||.||.||.||.||||||||.||..|..|.||.||.||.||.
BPUM_1410___s 200 GAGTAGAGCTTGCGACGAACAAAAGTGCTCCATCTATTTTAGTTGTCCCT 249
BSNT_02509___ 250 CGCCAAGTTCAGAATCCGATG--AAAACGAGCAAGCAGCTTGCGGCGGTG 297
||.|||.||.|..|||| || .||||.||.|||.|..|.||.||.|||
BPUM_1410___s 250 CGGCAAATTAAAGATCC--TGCAGAAACAAGTAAGAAATTAGCAGCAGTG 297
BSNT_02509___ 298 CTCAATATGTCAGAAGAAAAAGTATATAAACATGTGACTAAAAAAGCGTC 347
||.||||||||.|||||.||||..||.|||||.||.||.||.|||.|.||
BPUM_1410___s 298 CTGAATATGTCTGAAGAGAAAGCGTACAAACACGTCACGAAGAAAACATC 347
BSNT_02509___ 348 AATCGAA--AAGATCACTCCTGAAGGGAGAAAAATTTCAAATGAGAAGGC 395
|||.||| ||..||| |||||.||.|||||..|.|||.||||.||.||
BPUM_1410___s 348 AATAGAACGAATTTCA--CCTGAGGGCAGAAAGGTATCACATGAAAAAGC 395
BSNT_02509___ 396 GAAGGAAATTAAAGCGCTTGATTTAAAAGGTGTGTATGTTGCGGAGGACA 445
.||.|||.|.|.||.||||||||||.|||||||||||||.||.||.||||
BPUM_1410___s 396 AAAAGAAGTGAGAGAGCTTGATTTAGAAGGTGTGTATGTAGCAGAAGACA 445
BSNT_02509___ 446 GTATCCGTCATTACCCGTTCGGCAGCTTTTTATCTCATGTGCTTGGATTT 495
|.|||.|.|||||.|||||.|||||||||.|.||.|||||.|||||.|||
BPUM_1410___s 446 GCATCAGACATTATCCGTTTGGCAGCTTTCTTTCACATGTACTTGGTTTT 495
BSNT_02509___ 496 GCAGGAATTGACAACCAAGGACTCCTTGGATTGGAAGCCTATTACGACGA 545
||.||.||.||.||.|||||..|.||.||..|.||||||||.||.||.||
BPUM_1410___s 496 GCTGGCATCGATAATCAAGGCTTACTAGGGCTTGAAGCCTACTATGATGA 545
BSNT_02509___ 546 TGATTTAAAAGGGGAAAAAGGTTCTGTCAAGTTTTATACAGATGCCAAGG 595
.||..|||||||.||||||||.|||||.||.||||||.|.|||||.||.|
BPUM_1410___s 546 CGACCTAAAAGGTGAAAAAGGCTCTGTGAAATTTTATTCTGATGCAAAAG 595
BSNT_02509___ 596 GTAAAAAAATGCCTGATGAAGCGGATGACTATACGCCGCCTAAGGATGGG 645
|..||||||||||.||||||||.|||||.|||||.||.|||||.|||||.
BPUM_1410___s 596 GGCAAAAAATGCCAGATGAAGCAGATGATTATACACCCCCTAAAGATGGT 645
BSNT_02509___ 646 CTTGATATGAAGCTGACGGTTGATTCAAAGGTCCAGACGATAATGGAAAG 695
|||||||||||..||||.||.|||.||||.||.||.||.||.||.|||.|
BPUM_1410___s 646 CTTGATATGAAATTGACAGTCGATGCAAAAGTACAAACTATCATAGAACG 695
BSNT_02509___ 696 AGAGCTTGATAACGCTGAGGCCAAATATCATCCGGACGGCATGATTGCCG 745
.||..|.||.|||||..||||.||.|||.||||.||.||.||||||||..
BPUM_1410___s 696 GGAATTAGACAACGCGCAGGCAAAGTATAATCCTGATGGTATGATTGCGA 745
BSNT_02509___ 746 TAGCCATGAATCCGAAAAACGGAGAAATTTTGGGGATGTCTAGCAGGCCT 795
|.||.||||||||||||||.||.|||.|..|.||.|||||.|||||.||.
BPUM_1410___s 746 TTGCGATGAATCCGAAAAATGGTGAAGTGCTCGGAATGTCGAGCAGACCA 795
BSNT_02509___ 796 GACTTCGACCCTGCTGATTACCAATCTGTTGATCCGTCCGTCTACAATCG 845
||.||.||.||.||||||||.|||||.||||||.|....||.|.|||.||
BPUM_1410___s 796 GATTTTGATCCAGCTGATTATCAATCAGTTGATTCAAAAGTGTTCAACCG 845
BSNT_02509___ 846 AAACCTGCCAGTATGGAGCACGTATGAACCGGGATCTACCTTTAAAATTA 895
|||.||.||.||.||||||||.|||||.|||||.||.||.||||||||||
BPUM_1410___s 846 AAATCTACCGGTGTGGAGCACATATGAGCCGGGTTCAACATTTAAAATTA 895
BSNT_02509___ 896 TTACACTTGCAGCAGCCCTTGAAGAGCAAAAAGTAAATTTGAAACGGGAT 945
||||||||||||||||..|.||||||.|.|||||.|||||.|||||.|||
BPUM_1410___s 896 TTACACTTGCAGCAGCATTAGAAGAGAAGAAAGTTAATTTAAAACGTGAT 945
BSNT_02509___ 946 CAATTTTATGATAAAGGGCATGCGGA--------AGTGGACGGAGCGAGA 987
..|||||.|||.| ||||| |||.||.||.||.||.
BPUM_1410___s 946 TCATTTTTTGACA--------GCGGATCTGTGACAGTTGATGGTGCAAGG 987
BSNT_02509___ 988 CTGCGGTGCTGGAAAAGAGGCGGGCACGGGCTTCAGACGTATC-TGGAAG 1036
||..|.||||||||||.||||||.|||||....|||.|.| || ||||||
BPUM_1410___s 988 CTTAGATGCTGGAAAAAAGGCGGACACGGATCGCAGTCAT-TCTTGGAAG 1036
BSNT_02509___ 1037 TTGTGCAGAACTCCTGCAACCCGGGGTTTGTTGAATTAGGCGAGCGCTTA 1086
|.||.||.||.|||||.|||||.||.|||||.||..|.||.||.||..|.
BPUM_1410___s 1037 TCGTTCAAAATTCCTGTAACCCCGGCTTTGTAGAGCTGGGAGACCGTCTG 1086
BSNT_02509___ 1087 GGAAAGGAAAA--GCTTTTCAAATATATCAAAGACTTTGGTTTTGGACAA 1134
||.||.||||| ..||||| .|||||||||.|.||.||.|||||.|||
BPUM_1410___s 1087 GGTAAAGAAAAATTATTTTC--TTATATCAAAAATTTCGGATTTGGCCAA 1134
BSNT_02509___ 1135 AAAACGGGGATTGATCTCCAAGGCGAGGGAACAGGCATCTTATTCCCGCT 1184
|||||.||.|||||.||.|||||.||.||....||.||.||.||||||||
BPUM_1410___s 1135 AAAACCGGAATTGACCTTCAAGGAGAAGGGCGTGGGATTTTGTTCCCGCT 1184
BSNT_02509___ 1185 TGAGAGAGTGGGCCCGGTGGAGCAAGCAACTACGGCTTTCGGACAGGGAG 1234
|||..|.||.||.||.||.|||||.||.||.|||||.||.||.||.||.|
BPUM_1410___s 1185 TGATCGTGTAGGTCCTGTAGAGCAGGCGACCACGGCCTTTGGTCAAGGTG 1234
BSNT_02509___ 1235 TATCCGTCACGCCGATTCAGCAAGTTGCAGCAGTATCCGCCGCTGTAAAC 1284
|.||.||.||.||||||||.|||||.||.||||||.|.||.||.|||||.
BPUM_1410___s 1235 TTTCTGTTACACCGATTCAACAAGTGGCTGCAGTAGCAGCTGCAGTAAAT 1284
BSNT_02509___ 1285 GGAGGAACGCTCTATACACCTTATATTGCAAAGGAATGGATCGATCCTGT 1334
||.||.||.||.||.||.||.|||||||||||.||.|||||.|||||..|
BPUM_1410___s 1285 GGTGGGACACTTTACACGCCATATATTGCAAAAGAGTGGATAGATCCAAT 1334
BSNT_02509___ 1335 TACGAAGAAAA-CGGTC---AAAAAACAATCACCAATCGCAAAGAAACAA 1380
.|| |||| .|||| |||||.|||||.||.||.||.||.||..||
BPUM_1410___s 1335 CAC----AAAAGAGGTCGTGAAAAAGCAATCGCCTATTGCCAAAAAGAAA 1380
BSNT_02509___ 1381 GTCATTTCTGAGGAAACATCCAAACAAATCCGCTATGCTCTAGAAAGCGT 1430
||.|||||.|..||||||||.|||.|||||.|.|||||.||.|||||.||
BPUM_1410___s 1381 GTGATTTCAGCAGAAACATCTAAAGAAATCAGGTATGCACTTGAAAGTGT 1430
BSNT_02509___ 1431 CGTCGCAGAAGGAACCGGCCGCAATGCATTTGTAGAAGGATATCGTGTCG 1480
.|||||..|||||||.|||||.|||||||||||.|||||.|||||.||||
BPUM_1410___s 1431 AGTCGCCCAAGGAACTGGCCGAAATGCATTTGTTGAAGGGTATCGGGTCG 1480
BSNT_02509___ 1481 GAGGAAAAACGGGAACTGCACAAAAGGTTAAAGATGGAAAATATCTTGAA 1530
|.||||||||.|||||.||.||.|||||.||.||.|||||.|||.|.||.
BPUM_1410___s 1481 GCGGAAAAACAGGAACAGCCCAGAAGGTAAAGGACGGAAAGTATATGGAG 1530
BSNT_02509___ 1531 AACAACCATATTGTATCATTTATCGGTTTCGCGCCAGCTGATGATCCGAG 1580
||.|||||||||||.||.|||||||||||.|||||.||.|||||.||.||
BPUM_1410___s 1531 AATAACCATATTGTGTCGTTTATCGGTTTTGCGCCTGCCGATGACCCAAG 1580
BSNT_02509___ 1581 TCTAGTCGTCTACGTTGCGGTGGATAACCCGAAAGGCACGATTCAGTTTG 1630
|.|.||.|||||.||.||.|||||||||||.||||||||.|||||.||||
BPUM_1410___s 1581 TATCGTAGTCTATGTGGCTGTGGATAACCCAAAAGGCACCATTCAATTTG 1630
BSNT_02509___ 1631 GCGGAACGGTGGCAGCGCCTATTGTCGGAAATATTATGAGAGACAGTCTG 1680
|.||.||.||.||.|||||.|||||.||..||||||||.|.||.||.|||
BPUM_1410___s 1631 GTGGTACCGTTGCCGCGCCAATTGTTGGTCATATTATGCGGGATAGCCTG 1680
BSNT_02509___ 1681 CCGGAACTTGGTGTGAAGCTCCGGAAAAA-------TCAAATCGAGAAAA 1723
||.||..|.|||||||| ||||| .|||||.||.||.|
BPUM_1410___s 1681 CCTGAGATGGGTGTGAA-------AAAAAGAAAAGGCCAAATTGAAAAGA 1723
BSNT_02509___ 1724 AATACCAATGGAACGACACAAAAACAATAGAAGTTCCGAATGTTGTAG-- 1771
|.||.||.|||...|||||||||||.||.|||||.||||||.||||||
BPUM_1410___s 1724 AGTATCAGTGGCTGGACACAAAAACCATTGAAGTACCGAATCTTGTAGGA 1773
BSNT_02509___ 1772 GGATGTCTGTCTCAGATCTTGAGTCACTATTGGTGAATCTCAATG-TGGA 1820
||| |||||.|||||||||||.||.||.|||.|.|| ||.||.| |.||
BPUM_1410___s 1774 GGA--TCTGTTTCAGATCTTGAATCCCTCTTGATTAA-CTTAAAGATCGA 1820
BSNT_02509___ 1821 TGCTTCCGGGAAAGGGAGCAAAATCGTTAAACAATCGCCAGCTGCCGGAA 1870
|||.||.||.|..||.||.||..|.||.||.|||||.||.|||||.||.|
BPUM_1410___s 1821 TGCCTCAGGAACTGGCAGTAAGGTAGTGAAGCAATCACCTGCTGCGGGGA 1870
BSNT_02509___ 1871 CGAAAGTAAAAGAAGGCTCAAAGATACGCGTGTATTTGACTGAAGAAGAT 1920
|.||.||.|||||||||||.|.|||..| |||..|||.|| |.|||
BPUM_1410___s 1871 CAAAGGTCAAAGAAGGCTCGACGATCAG-----ATTATACTTAA-ACGAT 1914
BSNT_02509___ 1921 GAA-AAGGAGGCAGCCGATTGA 1941
||| ||
BPUM_1410___s 1915 GAATAA---------------- 1920
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