Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02503 and BPUM_1405
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:00
# Commandline: needle
# -asequence dna-align/BSNT_02503___yllA.1.24716.seq
# -bsequence dna-align/BPUM_1405___yllA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02503___yllA-BPUM_1405___yllA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02503___yllA-BPUM_1405___yllA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02503___yllA
# 2: BPUM_1405___yllA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1772
# Identity: 1119/1772 (63.1%)
# Similarity: 1119/1772 (63.1%)
# Gaps: 304/1772 (17.2%)
# Score: 3239.5
#
#
#=======================================
BSNT_02503___ 1 ATGCAGCTAACTGAACTTTCCATCAAAAATCAGAATGTGTTTGTACAGCA 50
|||||..|.|||||||||||||||..||.|||||||.|.||..|||...|
BPUM_1405___y 1 ATGCAATTGACTGAACTTTCCATCCGAAGTCAGAATTTATTCATACGTGA 50
BSNT_02503___ 51 CTATATAGATGGCAAAGAAGAAATGTCTTCTTTTTTTGATTACAGTATTC 100
.||||||||.|..|||.||||.|||.|..|||||||||||||...|||.|
BPUM_1405___y 51 TTATATAGAAGAAAAAAAAGAGATGACGACTTTTTTTGATTATGATATAC 100
BSNT_02503___ 101 ATCATAAGGACATGTGGCGCGAA----AGACTGGAAGA-CTTAT------ 139
||..|.||.|||..|| ||| |||...||.|| ||.||
BPUM_1405___y 101 ATTCTGAGCACACATG----GAAAAAGAGATACGACGATCTCATGAAAAT 146
BSNT_02503___ 140 ---CTTCCCGGTTTTTCGCAAGAGAGGAATTGGCGGCGTACTTAA---CC 183
||||||| ||| ||||..||.||||..||..|.| |.
BPUM_1405___y 147 GAGCTTCCCG------CGC----GAGGCTTTAGCGGATTATATGAGTGCA 186
BSNT_02503___ 184 TCTTAC-CATAAT---AAATTCGGTTCAAGTGCGATGCAGTCTG--CTAT 227
|.|.|| ||.|.| || |||| || ||||||| |||.| | ||
BPUM_1405___y 187 TATCACGCAAAGTTTGAA--TCGG--CA---GCGATGC-GTCAGAAC-AT 227
BSNT_02503___ 228 TGAGAAGCTGAAGGACCCGT--CAAGTGCCGC-----TGTAGTCGGCGGA 270
||| ||.||.|||| ||||.|..|| .||.|||||.||.
BPUM_1405___y 228 TGA-------AAAGATCCGTGACAAGCGGAGCGTCATGGTGGTCGGAGGG 270
BSNT_02503___ 271 CAGCAGGCAGGACTTTTAACAGGACCGCTTTACACCATACATAAAATCAT 320
||||||||.||.||.|||||||||||||||||.|||||||||||||||||
BPUM_1405___y 271 CAGCAGGCTGGTCTATTAACAGGACCGCTTTATACCATACATAAAATCAT 320
BSNT_02503___ 321 TTCAATCATT--GTTTTAGCAAAGCAACAAGAAAAGGAACT--GCAAGTG 366
.||.|||||| |||| |||||..||.||||||..||||| || ||.
BPUM_1405___y 321 ATCCATCATTCAGTTT--GCAAAAGAAAAAGAAACAGAACTTGGC--GTC 366
BSNT_02503___ 367 CCTGTCATACCAATCTTCTGGGTGGCTGGAGAAGACCACGATTTGGATGA 416
||.||.||.||..||||.|||||.||.||.||.||.||.||..|.|||||
BPUM_1405___y 367 CCAGTGATTCCGGTCTTTTGGGTAGCCGGTGAGGATCATGACGTAGATGA 416
BSNT_02503___ 417 GATTAATTTTGTTCACACATCTGAAGAGAATGGGCCTGTGAAAAAAAAGC 466
.|||||||||||..|||||||||.|||.||.|||||.||||||.||||.|
BPUM_1405___y 417 AATTAATTTTGTGTACACATCTGGAGAAAAAGGGCCAGTGAAACAAAAAC 466
BSNT_02503___ 467 TGCCTCAGT-CTTATTGGAAGAAATCATCAGCCGCG---AGTACATCGCT 512
|| |||.| |.||..|..|.||| |.|.||.||| ||.|...||||
BPUM_1405___y 467 TG--TCATTACATAACGTCAAAAA--AGCGGCTGCGAAAAGAATCCCGCT 512
BSNT_02503___ 513 TGATCAGGAAAAGTGTGCCGCGTGGATAGA----------TGATGTTTTT 552
||||||.|||||...|| ||| ||||||.|||
BPUM_1405___y 513 TGATCAAGAAAAAACTG----------AGATATGGCTCCGTGATGTATTT 552
BSNT_02503___ 553 GCCGCTTTTGAAGAAACAGACCATACGAA-----------TACA-CTTCT 590
.|..|.|.|||||||.|.|...||||.|| |||| |||||
BPUM_1405___y 553 TCAACATATGAAGAATCTGCATATACCAATGATTTGCTTGTACAGCTTCT 602
BSNT_02503___ 591 CGACAATGTGAAACGATGTTTAAGGGAATCTGTTACGTTTACTGACTTCT 640
.|||||||||.|..||||....|||||||||||.||||
BPUM_1405___y 603 ------------TCGATGTTTACGCAAATCACAAACGTTTACTGATTTCT 640
BSNT_02503___ 641 TTGAACTGCTGATCGCGGATTTG-----TTCCAAGAAGA-GGGCTTAG-T 683
||||| || ||| .|.||.|| ||..||||||| ||||| | |
BPUM_1405___y 641 TTGAA-TG--GAT--TGTATGTGACCTCTTTGAAGAAGATGGGCT--GCT 683
BSNT_02503___ 684 TTTATTAAATTCTGGGGA-TCCGGGGATTAAAAAGCTGGA---AACGGCC 729
||||||.|||||.||.|| |..||.| |.|||...||.|| .|||
BPUM_1405___y 684 TTTATTTAATTCAGGTGACTTAGGTG-TCAAACCACTCGAGCGTACG--- 729
BSNT_02503___ 730 ATGTTCCAAAAGATTCTTCGAGA-AAATGATGA-------ACTCGCCCGG 771
.|.|||.|..|.|||.|| |||| ||||||||| |.|||
BPUM_1405___y 730 CTATTCAAGCACATTGTT-GAGACAAATGATGAGGTTACTAATCG----- 773
BSNT_02503___ 772 GCTGT--ATCAGATCAGCAGGC--CTTCATGCGTCAAGCAGGCTACAAAC 817
|.| ||.| ||| |||||| || |||...|.||||||.||..|.|
BPUM_1405___y 774 --TTTAAATGA-ATC-GCAGGCTGCT--ATGAAACGAGCAGGATATCAGC 817
BSNT_02503___ 818 CGATTATCGAGTCCGGAAAAGAGCAGGCGAATCTGTTTTATGAATACGAA 867
|||||||.||..||||..|..|.|||||||||||||||||.|||||.||.
BPUM_1405___y 818 CGATTATTGAAGCCGGTGACAATCAGGCGAATCTGTTTTACGAATATGAT 867
BSNT_02503___ 868 GAAGAGCGTTTTTTAATTGAAAAAGATAACGGCCGATTTGTCATCAAAGA 917
||.||.|||||..|||||||||||||.||||||||.|||.|.||
BPUM_1405___y 868 GAGGAACGTTTCCTAATTGAAAAAGAGAACGGCCGGTTTTTTAT------ 911
BSNT_02503___ 918 GCTTGATC-----TAGG------ATGGACGATGGATGAACTTCATACACA 956
||| |.|| ||||||.|.|||.||.|||
BPUM_1405___y 912 -----ATCGGAAGTGGGGCTTACATGGACAAAGGAAGAGCTT-------- 948
BSNT_02503___ 957 T--ATGGAA------GAACATCCAGAGCGTTTCAGCAACAATGTTGTAAC 998
| |.|||| ||.||.|||||.||.||.|||||||||||.||.||
BPUM_1405___y 949 TTGAAGGAAGTTGAGGAGCACCCAGAACGATTTAGCAACAATGTGGTGAC 998
BSNT_02503___ 999 GAGACCGTTAATGCAGGAA---TTTCTCATTCCGACTTTAGCATTTATTG 1045
|.|.||.||.||||||||| .||||| |||||..|.||.|||||.|
BPUM_1405___y 999 GCGTCCCTTGATGCAGGAAACCCTTCTC---CCGACACTTGCTTTTATGG 1045
BSNT_02503___ 1046 CAGGGCCTGGAGAAATCAACTATTGGGGCGAGCTCAAACAGG---CTTTT 1092
||||.|..||.||..|.|||||||||||.|||||.|| ||| ||||
BPUM_1405___y 1046 CAGGACACGGTGAGGTTAACTATTGGGGAGAGCTGAA--AGGAATCTTT- 1092
BSNT_02503___ 1093 GCGGTG-ATGGGTTTC-----AAAATGCCTCCTGTCATGCCAAGGCTGAA 1136
|.| || |||| ||.|||.|.|||||..|.||.||.|||.|
BPUM_1405___y 1093 ---GAGCAT---TTTCATTTAAAGATGGCGCCTGTTCTTCCGAGACTGCA 1136
BSNT_02503___ 1137 CATTACGATACTTGAGCGGCATATTGAGAAAAAACTGGC------TGAAC 1180
..|.||.||.|||||..|.||.||.||.||.||||||.| .||||
BPUM_1405___y 1137 TGTGACCATTCTTGAAAGACACATCGACAAGAAACTGCCAGTTAGAGAAC 1186
BSNT_02503___ 1181 GGAATATCTCGTTACAAGACGCGATTGAGAGC---GGAACGGAG---AAT 1224
|.|||.||.|||| ||.|| ..||.|||| ||.
BPUM_1405___y 1187 ------TGTCGGTAGAAGA--------AGTGCTCACAAATGGAGTAAAAG 1222
BSNT_02503___ 1225 CAAAGAGAGACATACTTCGAGCGCCAGATTCCGGAAGAGTTT-----ACG 1269
.|||||.|||| ||| ||..|||.|.|| |||.| ||.
BPUM_1405___y 1223 AAAAGAAAGAC---------GCG-CATTTTCAGCAA-AGTCTTCCAGACA 1261
BSNT_02503___ 1270 GCGGTGATGGATCAGGCG-----AAAAGCCAAA-TTGAAGCGATTCACAA 1313
|| .|.|.|||.||| |.|.|||||| .||| |||..|.|
BPUM_1405___y 1262 GC----TTTGTTCAAGCGGTTGAACATGCCAAACGTGA----ATTGGCTA 1303
BSNT_02503___ 1314 A-----ACGG-----TCCGGCAGGAGGCGTTAAAGGTTGATCAAAGCATG 1353
| |.|| |..|.||.||.||..|..||.||||.|.||.|.|.
BPUM_1405___y 1304 ATGCTCATGGCGTGATGAGACAAGAAGCACTGGAGATTGAACCAAACTTC 1353
BSNT_02503___ 1354 GAACCTTTA-CTCCT---GAAAAATGCCGCTTTTATTCAGGATCAGCTTC 1399
||.| | ||.|| .|||||||||...||||||.|.||.|||||||
BPUM_1405___y 1354 GAGC----AGCTGCTAGATAAAAATGCCAAATTTATTGAAGACCAGCTTC 1399
BSNT_02503___ 1400 AATTCTTAGAGCACACGGTGACGAAGCGAATTGAAGAAAAAGAAGGCTAC 1449
||||..|..|.||.|.|||..||.||||..|.|||||.||.|||||.||.
BPUM_1405___y 1400 AATTTGTGTATCAAAAGGTTGCGCAGCGTGTGGAAGAGAAGGAAGGATAT 1449
BSNT_02503___ 1450 GTCTTGAAGGATTATGAAAGAATTCAAAATAGCATTAAGCCGCTTCTTGC 1499
.||.|...|||.|.||||.|.|||.|||||||..|.||.||.||...|||
BPUM_1405___y 1450 ATCCTTCGGGACTTTGAACGGATTGAAAATAGTTTAAAACCACTAGATGC 1499
BSNT_02503___ 1500 GCCGCAAGAACGGATTTGGAATATCATGTATTATTTGAACAGGTACGGTC 1549
.||.||||||.|.|||||||||||||||||.|.|||.||||..||.||||
BPUM_1405___y 1500 CCCACAAGAAAGAATTTGGAATATCATGTACTTTTTAAACAAATATGGTC 1549
BSNT_02503___ 1550 CAAAATTCTTCACGACATTCAAGAATCTGCCATTTTCTTTTCAAAATCAA 1599
||.|||||||||..||.|||||.||||||||||||||.|||||||| |||
BPUM_1405___y 1550 CAGAATTCTTCAAAACGTTCAAAAATCTGCCATTTTCATTTCAAAA-CAA 1598
BSNT_02503___ 1600 -CATCAAGTTGTCAAACTTTGA 1620
||.|||.||||||||||||||
BPUM_1405___y 1599 GCAACAAATTGTCAAACTTTGA 1620
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