Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02498 and BPUM_1400

See Amino acid alignment / Visit BSNT_02498 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:59
# Commandline: needle
#    -asequence dna-align/BSNT_02498___ylbN.1.24716.seq
#    -bsequence dna-align/BPUM_1400___ylbN.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02498___ylbN-BPUM_1400___ylbN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02498___ylbN-BPUM_1400___ylbN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02498___ylbN
# 2: BPUM_1400___ylbN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 528
# Identity:     394/528 (74.6%)
# Similarity:   394/528 (74.6%)
# Gaps:          18/528 ( 3.4%)
# Score: 1402.0
# 
#
#=======================================

BSNT_02498___      1 ATGAAATGGACGATTTATCAGCTGCATC-AAATGCCAAAACAAAGTTTTG     49
                     .||||||||||..||||||||.|.|||| |||.||.|||| |.||.||.|
BPUM_1400___y      1 TTGAAATGGACAGTTTATCAGTTACATCAAAAAGCTAAAA-ACAGCTTCG     49

BSNT_02498___     50 AGTTTGATGAAACAGTTGAGTTAAATGAGCTGACAAAGCTGAATTCTGAC     99
                     |.|||.||||.||.|||||.||||||||.||.||.|..||..||||.||.
BPUM_1400___y     50 ATTTTCATGAGACGGTTGACTTAAATGAACTTACTAGCCTTCATTCAGAT     99

BSNT_02498___    100 ATTCGCCGCATTTCTCCCGTCCGGGTGAAGGGCA---GAGCGGATATCAA    146
                     ||.||.||||||||.||.||...||||||.||.|   |||.|   |||.|
BPUM_1400___y    100 ATACGTCGCATTTCACCAGTAGAGGTGAAAGGGACTGGAGTG---ATCGA    146

BSNT_02498___    147 ATCCAAACAGGTTTCGTTTGATTTTACAATTTCAGGCGAAATGATTTTGC    196
                     |||.||.||.||..|.||||||||.||.||..||||.|||||||..||||
BPUM_1400___y    147 ATCAAAGCAAGTCGCATTTGATTTAACCATCACAGGTGAAATGACATTGC    196

BSNT_02498___    197 CATGCTCAAGAACACTCGTTGATGTCCCGTATCCATTTGAAATTTCAACA    246
                     |.||.||||||||.||.||||||||....||||||||||..||||||||.
BPUM_1400___y    197 CTTGTTCAAGAACGCTTGTTGATGTAAATTATCCATTTGCGATTTCAACG    246

BSNT_02498___    247 AAAGAACTGTTTATATTTCATCACACGGATGATATAGAAGATGATGACGT    296
                     ||||||||.|||.||.|||||.|.||.||.||.|||||||||||.|||||
BPUM_1400___y    247 AAAGAACTATTTGTACTTCATAAGACAGACGACATAGAAGATGAAGACGT    296

BSNT_02498___    297 TCATATTGTTGAGGACGATACTATCGACTTAACTCCGATCGTGAAAGAAG    346
                     |..||||||.||.|||||.|..|||||||||||.||..|.||.||.||||
BPUM_1400___y    297 TTCTATTGTAGAAGACGACATCATCGACTTAACGCCTTTAGTCAAGGAAG    346

BSNT_02498___    347 AAATTCTTTTAGAAATCCCTATGCAAATCTTTTG---TGAATCTGAACAA    393
                     ||||||||.|.|||.|.||.||||||||||||||   |.||.|||   |.
BPUM_1400___y    347 AAATTCTTCTTGAAGTGCCGATGCAAATCTTTTGCGATCAAACTG---AC    393

BSNT_02498___    394 GAAAAAGGAGCTGCTCCTCAAGAAGGAAAGGATTGGCAAGTCATTTCGGA    443
                     |.||||||.|||||.||.||||||||.||.||.|||...|||||||||||
BPUM_1400___y    394 GTAAAAGGTGCTGCACCACAAGAAGGGAATGACTGGGCGGTCATTTCGGA    443

BSNT_02498___    444 AGAAG-ACAAGAAGAATCAAGTTGATCCGAGACTTGCAGCCCTTGAA-AA    491
                     |||.| |||..|| ||.|.|.|||||||..| .|||.|...|||||| ||
BPUM_1400___y    444 AGATGCACATCAA-AACCGAATTGATCCTCG-TTTGGAAGGCTTGAAGAA    491

BSNT_02498___    492 GCTCTTAAAACAAGATGATGAATCTTAA    519
                     |||||||.||.||.||.|||||||||||
BPUM_1400___y    492 GCTCTTAGAAGAAAATAATGAATCTTAA    519


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