Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02494 and BPUM_1397

See Amino acid alignment / Visit BSNT_02494 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:59
# Commandline: needle
#    -asequence dna-align/BSNT_02494___ylbK.1.24716.seq
#    -bsequence dna-align/BPUM_1397___ylbK.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02494___ylbK-BPUM_1397___ylbK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02494___ylbK-BPUM_1397___ylbK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02494___ylbK
# 2: BPUM_1397___ylbK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 826
# Identity:     542/826 (65.6%)
# Similarity:   542/826 (65.6%)
# Gaps:          89/826 (10.8%)
# Score: 1642.5
# 
#
#=======================================

BSNT_02494___      1 -----TTGGCCAAACCTAAAATCGGGTTAGCGTTAGGATCGGGAGGGGCC     45
                          ..|.|||..|     ||||||.|.||||||||.||.|||||.||.
BPUM_1397___y      1 ATGAGGCGACCAGTC-----ATCGGGCTTGCGTTAGGCTCTGGAGGTGCG     45

BSNT_02494___     46 AGAGGGCTCGCTCATCTCGGTGTGCTTTCCAGTTTACATAAGCACCAA--     93
                     ||.||..|.||.|||.||||.||..|.||.|||   |.|.||.|.|||  
BPUM_1397___y     46 AGGGGAATGGCACATATCGGAGTTTTATCTAGT---CTTGAGAAACAAGG     92

BSNT_02494___     94 -ATTGAAGTGGATATGATTGCAGGAAGCAGCATGGGCGC-TTTGGTGGGC    141
                      |||.|.||.||||||||.||.||.|||||.||.||||| .|||.|||| 
BPUM_1397___y     93 TATTCAGGTAGATATGATCGCTGGCAGCAGTATTGGCGCACTTGTTGGG-    141

BSNT_02494___    142 AGTTTTTACGCCGCCGGACATGACGTGGCAACGATGAAAAAAGTAGCCAA    191
                     ||||||||.||.||.|||||.|||||.|.||..|||||||||.|.||...
BPUM_1397___y    142 AGTTTTTATGCGGCAGGACAAGACGTAGAAAAAATGAAAAAACTTGCACT    191

BSNT_02494___    192 AGCCTTTAAACGAAGGCTTTATGCTGATTATACGGTTCCGAAACTCGGTT    241
                     .|.|||.|.|.|||.|..|||||||||.|||||..|.||.|||.|||||.
BPUM_1397___y    192 TGTCTTCAGAAGAAAGTATTATGCTGACTATACACTGCCAAAAATCGGTC    241

BSNT_02494___    242 TTTTAAAAGGTGACCGCGT----CAGACAGCTTG-TGCATGCTTATACAT    286
                     ||.|||||||..|.||..|    |||     ||| |.||..|.|.|||||
BPUM_1397___y    242 TTCTAAAAGGAAATCGAATTTTGCAG-----TTGATCCACACGTTTACAT    286

BSNT_02494___    287 -TCGGAAAACCGATT-GAAGAGCTCCAAATCCC----GCTGGGCATTGTT    330
                      |.||||||  .||| |||||..|...|||.||    ||||    |.|||
BPUM_1397___y    287 ATGGGAAAA--AATTCGAAGAATTAAGAATGCCCCTTGCTG----TGGTT    330

BSNT_02494___    331 GCGTGTGATCTACAGACGGGAGAAAAGATTGTGTTCCGAAAAGGATCAGT    380
                     ||.|||||.||..||||.||.||.|||.|.|||||...||||||.||.||
BPUM_1397___y    331 GCCTGTGACCTCGAGACAGGGGAGAAGGTCGTGTTTAAAAAAGGGTCTGT    380

BSNT_02494___    381 GTCAGATGCAGTGAGGGCCAGCATCAGCATCCCGGGTATCTTTATTCCGC    430
                     .|||.|.|||||.||.||.||||||||.||.|||||..|.|||.||||.|
BPUM_1397___y    381 CTCACAAGCAGTCAGAGCGAGCATCAGTATTCCGGGCGTGTTTGTTCCTC    430

BSNT_02494___    431 A--------GCGGCTGGACGGACGCCTTCTTGTAGACGGCGCGGTCGTCG    472
                     |        ||||| .|||.|       ||.||.||.||.|||||.||.|
BPUM_1397___y    431 ATGAAATGGGCGGC-AGACAG-------CTAGTGGATGGAGCGGTTGTAG    472

BSNT_02494___    473 ATCGAATTCCGGTTTCTGTTGTGAAAGACATGGGAGCTGATATTATCATC    522
                     |.||.|||||.||.||||||.|.|||||.|||||.||.||..|.||.|||
BPUM_1397___y    473 ACCGCATTCCTGTATCTGTTTTAAAAGATATGGGCGCAGACCTCATTATC    522

BSNT_02494___    523 GCTTCGGATGTTTCCAGGGTTCGAAAAACTGAAACAGC----AGTGCATA    568
                     ||.||.|||||.||.|||||...||||||.||||..||    ||     |
BPUM_1397___y    523 GCCTCTGATGTATCAAGGGTGAAAAAAACAGAAAAGGCGACGAG-----A    567

BSNT_02494___    569 TT-TTTGATGTGATTATGCAAAGTATGGATATACTGCAAAATGAATTAGT    617
                     || |..|||||.||||||||||||.||||.||.||.|||||||||||.||
BPUM_1397___y    568 TTATCGGATGTAATTATGCAAAGTTTGGACATCCTTCAAAATGAATTGGT    617

BSNT_02494___    618 GCGGCATCAAACAATTGCCGCAGATATCATGATTCGCCCTTCCCTTGAAA    667
                     .||.||||||||.|||...||.|||.|||||||.||.||....|||||||
BPUM_1397___y    618 CCGTCATCAAACCATTCATGCTGATGTCATGATCCGGCCGAGGCTTGAAA    667

BSNT_02494___    668 CTTACAGCTCAAGCTCGTTTGCCAATATTGAAGAAATGATATCGGCAGGC    717
                     |.|..|||||.||..|||||.|..|..|..|.||.|||||         .
BPUM_1397___y    668 CATTTAGCTCGAGTGCGTTTACACAGGTGCAGGAGATGAT---------T    708

BSNT_02494___    718 GAAG-AGGCGA-CAAACCGAATGATCAGC---AAGATAAG--AAAAGA--    758
                     |||| |||.|| |...|||.| |||||.|   .||.||||  ||||||  
BPUM_1397___y    709 GAAGCAGGTGAGCTTGCCGCA-GATCAACTAACAGGTAAGCTAAAAGATG    757

BSNT_02494___    759 -AATAGAGAATTGGGAGGGCTCATAA    783
                      .||.||.||.||||||.|.|.|   
BPUM_1397___y    758 TTATTGATAAATGGGAGTGTTAA---    780


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02494 and BPUM_1397

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
