Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02489 and BPUM_1393

See Amino acid alignment / Visit BSNT_02489 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:59
# Commandline: needle
#    -asequence dna-align/BSNT_02489.1.24716.seq
#    -bsequence dna-align/BPUM_1393___ylbG.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02489-BPUM_1393___ylbG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02489-BPUM_1393___ylbG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02489
# 2: BPUM_1393___ylbG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 295
# Identity:     144/295 (48.8%)
# Similarity:   144/295 (48.8%)
# Gaps:         101/295 (34.2%)
# Score: 441.0
# 
#
#=======================================

BSNT_02489         0 --------------------------------------------------      0
                                                                       
BPUM_1393___y      1 ATGGAAACCAAACGTCAAGGGATGGTCGTTTGGCTGCATTCGTTAAAGCA     50

BSNT_02489         1 -------ATGCTGAGGAAGTTCGGGAATGTGCACTATGTATCAA--AACG     41
                            ..|||.||.||.||.||.|||||.||||||.|.||||  ||  
BPUM_1393___y     51 GTCAAAGGCGCTAAGAAAATTTGGAAATGTTCACTATATTTCAAGGAA--     98

BSNT_02489        42 ATTAAAATATGTCGTACTGTACTGTGATATGGA------------CCAAA     79
                     |.|.|||||||..||..|.||.||.||||||.|            |||  
BPUM_1393___y     99 AATGAAATATGCAGTGATCTATTGCGATATGAATGATCTCGAGCGCCA--    146

BSNT_02489        80 TTGAAAAAACAATGGACAAG--------ATTGCGTCTTACTCATTTGTGA    121
                               .||||..|||        |||||        |||||||||
BPUM_1393___y    147 ----------TATGGCTAAGCTCAGCTCATTGC--------CATTTGTGA    178

BSNT_02489       122 AAAAAGTGGAGCCTTCTTATAAACCGTTTTTAAAATTGGAATTCGAGTCA    171
                     |....||.||||||||.|||||.||.|||.|.|||||.||.|.|||.||.
BPUM_1393___y    179 AGCGTGTTGAGCCTTCATATAAGCCTTTTATTAAATTAGAGTACGAATCC    228

BSNT_02489       172 AAGCTTGATAAGGCAAAAGAATACGATTATAAAATCGGCATATAG    216
                     ||..|.||.||.||||||||.||.|||||||||.|.|||.|.||.
BPUM_1393___y    229 AAATTGGACAAAGCAAAAGAGTATGATTATAAAGTGGGCTTTTAA    273


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