Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02476 and BPUM_1382
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:58
# Commandline: needle
# -asequence dna-align/BSNT_02476___ctaD.1.24716.seq
# -bsequence dna-align/BPUM_1382___ctaD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02476___ctaD-BPUM_1382___ctaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02476___ctaD-BPUM_1382___ctaD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02476___ctaD
# 2: BPUM_1382___ctaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1899
# Identity: 1426/1899 (75.1%)
# Similarity: 1426/1899 (75.1%)
# Gaps: 57/1899 ( 3.0%)
# Score: 5228.5
#
#
#=======================================
BSNT_02476___ 1 ATGTTGAATGC----GCTTACAGAAAAGCGG-----ACGCGCGGATCTAT 41
|||.|||.|.| ||| .|||||||| ..||||.| |||
BPUM_1382___c 1 ATGGTGAGTACAATAGCT----AAAAAGCGGGGGTTTGGCGCTG-TCT-- 43
BSNT_02476___ 42 GCTTTGGGATTATTTGACGACGGTGGACCATAAAAAAATCGCGATTCTTT 91
|.||||||||.|||||.|||||.|||||.||||||||.||..|.||.|
BPUM_1382___c 44 --TATGGGATTACTTGACAACGGTTGACCACAAAAAAATAGCCGTACTAT 91
BSNT_02476___ 92 ATTTAGTGGCAGGGGGATTCTTCTTTCTTGTCGGGGGAATTGAAGCGATG 141
|||||||||||||||||||.||||||.|..|.||.||..|.|||||||||
BPUM_1382___c 92 ATTTAGTGGCAGGGGGATTTTTCTTTTTAATTGGCGGCCTGGAAGCGATG 141
BSNT_02476___ 142 TTTATCAGAATTCAGCTTGCAAAGCCGGAAAATGCGTTTCTCAGTGCTCA 191
.|.|||.|.||||||||.||.|..||.|||||||..|||.|.||||||..
BPUM_1382___c 142 ATAATCCGTATTCAGCTAGCCATCCCTGAAAATGATTTTGTAAGTGCTGG 191
BSNT_02476___ 192 AGCATATAATGAAGTAATGACTATGCACGGAACGACGATGATCTTTCTGG 241
....||.||||||||.|||||.|||||||||||.||||||||.||.||.|
BPUM_1382___c 192 GTTTTACAATGAAGTCATGACGATGCACGGAACAACGATGATTTTCCTTG 241
BSNT_02476___ 242 CTGCGATGCCGCTCTTATTTGCCTTGATGAATGCGGTTGTGCCTTTGCAG 291
|.|||||||||||.||||||||.||.||||||||||||||.|||.|.||.
BPUM_1382___c 242 CAGCGATGCCGCTTTTATTTGCATTAATGAATGCGGTTGTACCTATTCAA 291
BSNT_02476___ 292 ATCGGGGCTCGGGACGTTTCGTTTCCATTTTTAAACGCGCTTGGTTTTTG 341
||.||.||.||.|||||..|.|||||.|||.|.||..|.|||||||||||
BPUM_1382___c 292 ATTGGTGCACGTGACGTAGCATTTCCGTTTGTGAATTCACTTGGTTTTTG 341
BSNT_02476___ 342 GCTCTTCTTTTTCGGGGGCATTTTCTTAAATCTAAGCTGGTTTTTGGGCG 391
|||.||||||||||||||.|||||||||||.||..|.||||||.||||||
BPUM_1382___c 342 GCTATTCTTTTTCGGGGGAATTTTCTTAAACCTTGGATGGTTTATGGGCG 391
BSNT_02476___ 392 GAGCGCCAGATGCGGGCTGGACGTCATATGCCTCACTTTCGCTTCATTCT 441
|.||.||.|||||.||.|||||..||||.||.|||||..||||..||||.
BPUM_1382___c 392 GGGCACCTGATGCAGGTTGGACTGCATACGCTTCACTCACGCTGAATTCA 441
BSNT_02476___ 442 AAAGGGCACGGCATAGACTT-----TTTCGTCCTCGGACTCCAAATATCG 486
.||||.||||||||.||.|| ||| |.||..|.||.|||.||
BPUM_1382___c 442 GAAGGACACGGCATGGATTTCTATATTT-----TAGGGTTGCAGATAGCG 486
BSNT_02476___ 487 GGGCTCGGGACGCTGATAGCCGGGATTAACTTTTTGGCCACGATTATCAA 536
||..|.||.|||||.||.||||||||.||||||.|.||.||||||||.||
BPUM_1382___c 487 GGTATTGGTACGCTAATTGCCGGGATCAACTTTCTTGCAACGATTATTAA 536
BSNT_02476___ 537 CATGAGGGCTCCGGGCATGACGTATATGAGGCTGCCTTTGTTTACATGGA 586
.|||||..|.||.||.||||||||||||||..||||..|.|||||.||||
BPUM_1382___c 537 TATGAGAACGCCTGGTATGACGTATATGAGAATGCCGCTCTTTACTTGGA 586
BSNT_02476___ 587 CGACATTTGTGGCCTCGGCATTGATTTTGTTCGCGTTTCCGCCGCTTACG 636
||||||||||.|||||.|||.|||||||.|||||.||.|||||||||||.
BPUM_1382___c 587 CGACATTTGTCGCCTCAGCACTGATTTTATTCGCATTCCCGCCGCTTACA 636
BSNT_02476___ 637 GTTGGATTGGCACTGATGATGCTGGATCGGCTGTTCGGCACCAATTTCTT 686
|..||..|.|||.||.|||||||.|||.|..||||.|..||.|..||.||
BPUM_1382___c 637 GCAGGGCTTGCAATGCTGATGCTTGATAGAATGTTTGATACGAGCTTTTT 686
BSNT_02476___ 687 TAATCCGGAGCTTGGCGGGAATACGGTCATTTGGGAGCATTTATTTTGGA 736
.|||||.|||||||||||.||.||..||||.|||||||||||.||.||||
BPUM_1382___c 687 CAATCCAGAGCTTGGCGGTAACACAATCATCTGGGAGCATTTGTTCTGGA 736
BSNT_02476___ 737 TCTTTGGCCATCCGGAGGTTTATATCTTAATTTTGCCTGCATTCGGTATT 786
|.||.||.||.||.||.||||||||||||||||||||.||||||||.||.
BPUM_1382___c 737 TTTTCGGACACCCAGAAGTTTATATCTTAATTTTGCCAGCATTCGGGATA 786
BSNT_02476___ 787 TTTTCAGAGGTCATCCCTGTGTTTGCCAGAAAGCGTTTGTTTGGGTACTC 836
|||||.||..||||.||.||||||||.|||||..|..|.|||||.||.||
BPUM_1382___c 787 TTTTCTGAAATCATTCCAGTGTTTGCAAGAAAAAGGCTATTTGGCTATTC 836
BSNT_02476___ 837 ATCAATGGTTTTTGCCATCGTGCTCATCGGCTTTTTGGGCTTTATGGTTT 886
.||.|||||.|||||.|..||..|.||.||.||..|.||.||.|||||.|
BPUM_1382___c 837 GTCCATGGTGTTTGCGACTGTATTGATTGGTTTCCTTGGATTCATGGTGT 886
BSNT_02476___ 887 GGGTGCATCACATGTTTACGACAGGTCTCGGCCCAATTGCAAATGCGATT 936
|||.|||||||||||||||.|||||.||.||.||.|||||.||||||||.
BPUM_1382___c 887 GGGCGCATCACATGTTTACAACAGGACTTGGTCCGATTGCCAATGCGATC 936
BSNT_02476___ 937 TTTGCGGTTGCAACAATGGCTATCGCGATTCCGACCGGGATTAAGATTTT 986
|||||.||.||.||||||||.||.|||.|.|||||.||.|||||..|.||
BPUM_1382___c 937 TTTGCTGTCGCCACAATGGCAATTGCGGTGCCGACAGGAATTAAAGTATT 986
BSNT_02476___ 987 TAACTGGCTGTTGACGATTTGGGGAGGAAATGTGAAGTATACAACCGCTA 1036
||||||||||.|.||.||.|||||.||.||||||||||.||||||..|.|
BPUM_1382___c 987 TAACTGGCTGCTCACCATATGGGGCGGTAATGTGAAGTTTACAACACCGA 1036
BSNT_02476___ 1037 TGCTGTATGCTGTCTCATTTATTCCATCCTTTGTGCTCGGCGGTGTGACG 1086
||||||||.|.||..|.|||||.||.||.|||.|.||.|||||.||.||.
BPUM_1382___c 1037 TGCTGTATTCCGTTGCTTTTATACCGTCATTTTTACTTGGCGGGGTAACT 1086
BSNT_02476___ 1087 GGAGTCATGCTGGCAGCTGCTGCGGCTGATTATCAGTTTCATGATACGTA 1136
|||||||||||.|||||.|||||.||.|||||||||||.|||||||||||
BPUM_1382___c 1087 GGAGTCATGCTTGCAGCCGCTGCAGCAGATTATCAGTTCCATGATACGTA 1136
BSNT_02476___ 1137 TTTTGTGGTTGCACACTTCCACTACGTCATTATTGGCGGTGTTGTATTCG 1186
.|||||.||.||.||.|||||||||||||||||.|||||.||||||||||
BPUM_1382___c 1137 CTTTGTCGTGGCGCATTTCCACTACGTCATTATCGGCGGGGTTGTATTCG 1186
BSNT_02476___ 1187 GCCTTTTAGCCGGTGTTCATTTCTGGTGGCCGAAAATGTTCGGTAAAATT 1236
|..|||||||.|||||.||||.||||||||||||.|||||.||.|||||.
BPUM_1382___c 1187 GTATTTTAGCTGGTGTGCATTACTGGTGGCCGAAGATGTTTGGGAAAATA 1236
BSNT_02476___ 1237 CTGCATGAAACGATGGGGAAAATTTCATTTGTATTGTTTTTTATCGGCTT 1286
|||.||||.|.|.|.|||||||||...|||||..|||||||..||||.||
BPUM_1382___c 1237 CTGAATGAGAAGCTAGGGAAAATTAGCTTTGTGCTGTTTTTCGTCGGTTT 1286
BSNT_02476___ 1287 TCACCTCACGTTTTTCATTCAGCATTTTGTCGG-CTTAATGGGG-ATGCC 1334
|||..|.||.||.||.|||||||||||..|||| ||| ||||| |||||
BPUM_1382___c 1287 TCATTTAACTTTCTTTATTCAGCATTTCCTCGGTCTT--TGGGGCATGCC 1334
BSNT_02476___ 1335 GCGCCGGGTTTATACGTTTTTGCCAGGACAGGGTCTGGAAACC--GGCAA 1382
||||||.||.|.|||.||..|||||...|||||..| |.||| ||.||
BPUM_1382___c 1335 GCGCCGAGTCTTTACATTCCTGCCAAATCAGGGGTT--AGACCTTGGGAA 1382
BSNT_02476___ 1383 CTTGATCAGTACAATTGGGGCGTTTTTTATGGCGGCAGCTGTTATTCTTC 1432
||||.|.|||||||||||||||.|.||||||...|.|||||||.|..|.|
BPUM_1382___c 1383 CTTGGTTAGTACAATTGGGGCGCTGTTTATGTTTGTAGCTGTTGTCATCC 1432
BSNT_02476___ 1433 TGCTGGTCAATGTCATATGGACATCGGTAAAAGGTGAATATGTAGGT--G 1480
|||||.|.||.|||||.|||||..|.|..|||||.||....|| || |
BPUM_1382___c 1433 TGCTGATTAACGTCATCTGGACGACAGCGAAAGGAGAGCGCGT--GTCGG 1480
BSNT_02476___ 1481 CTGATCCATGGCATGACGGACGTACGCTGGAATGGACCGTTTCTTCACCG 1530
.||||||.|||...||||||.|.|||||.||||||.|.||.||||||||.
BPUM_1382___c 1481 GTGATCCTTGGGGAGACGGAAGAACGCTTGAATGGGCAGTGTCTTCACCT 1530
BSNT_02476___ 1531 CCGCCGGAGTATAACTTTAAACAGCTTCCTTTTGTCAGAGGACTTGATCC 1580
|||||.||.||||||||||||||||||||..|||||||||||||.|||||
BPUM_1382___c 1531 CCGCCAGAATATAACTTTAAACAGCTTCCACTTGTCAGAGGACTAGATCC 1580
BSNT_02476___ 1581 GCTTTGGATCGAGAAGCAGGCAGGACACAAATCAATGACGCCGGCGGAAC 1630
..|.|||||.||.||...||..||..|.|||..||||||..|..|.||||
BPUM_1382___c 1581 ATTATGGATTGAAAAAATGGATGGTAAAAAAGGAATGACAGCATCTGAAC 1630
BSNT_02476___ 1631 CGGTTGATGATATTCATATGCCAAACGGCTCAATCC----TGCCGCTCAT 1676
||.|.|||||||||||.|||||.|| |.|.||| |.||..||||
BPUM_1382___c 1631 CGCTCGATGATATTCACATGCCGAA----TAATTCCATTTTACCTGTCAT 1676
BSNT_02476___ 1677 CATTTCCTTCGGCCTTTTTGTCGCAGCGTTCGGGCTGCTGTACAG--AAG 1724
.||.||.|||||.||.|||||..|||||||.||..|..||||..| ||
BPUM_1382___c 1677 TATCTCATTCGGTCTATTTGTGTCAGCGTTTGGTTTCATGTATCGCCAA- 1725
BSNT_02476___ 1725 TGATTAC-GCTTGGGGCCTGCCAGTGATCTTTATCGGGCTCGGCATCACA 1773
||..|| || |||||.||.||||||||..|.||.||.||.||.||.|||
BPUM_1382___c 1726 -GAGCACAGC-TGGGGACTTCCAGTGATTCTCATTGGTCTTGGTATTACA 1773
BSNT_02476___ 1774 TTTATTACGATGCTGCTTCGTTCAGTAATTGATGATCACGGCTATCATAT 1823
|||...||.||||||.||||.||..|.|..||.|||||.||.||.|||||
BPUM_1382___c 1774 TTTGCGACCATGCTGGTTCGCTCTCTTAAAGACGATCATGGGTACCATAT 1823
BSNT_02476___ 1824 TCATAAAGAGGAACTG-CCGA--ACGATGATAAAGGGGTGAAGGCATAA 1869
|||.|||||.||.||| |||| |||||||||||||||||||.||||||
BPUM_1382___c 1824 TCACAAAGAAGATCTGACCGATGACGATGATAAAGGGGTGAAAGCATAA 1872
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