Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02475 and BPUM_1381
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:58
# Commandline: needle
# -asequence dna-align/BSNT_02475___ctaC.1.24716.seq
# -bsequence dna-align/BPUM_1381___ctaC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02475___ctaC-BPUM_1381___ctaC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02475___ctaC-BPUM_1381___ctaC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02475___ctaC
# 2: BPUM_1381___ctaC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1106
# Identity: 770/1106 (69.6%)
# Similarity: 770/1106 (69.6%)
# Gaps: 73/1106 ( 6.6%)
# Score: 2573.5
#
#
#=======================================
BSNT_02475___ 1 ATGGTAAAGCATTGGCGTCTTATTTTATTATTAGCCTTAGTGCCGCTTCT 50
|||.|||...|.||||||.||..||.|.|.||...||||.||.||| ||.
BPUM_1381___c 1 ATGATAAGAAAATGGCGTGTTTATTCACTGTTTCTCTTATTGACGC-TCG 49
BSNT_02475___ 51 ATTAAGC-GGATGTGGAAAACCTTTTTTATCCACGCTCAAGCCTGCTGGC 99
.||..|| ||.|||||..||||.|..|||||.||.|||||.||.|.|||.
BPUM_1381___c 50 TTTTGGCGGGCTGTGGTGAACCATACTTATCAACACTCAAACCAGTTGGG 99
BSNT_02475___ 100 GAGGTGGCTGATAAACAGTTTGACCTGACAGTGCTCAGCACATTGATTAT 149
||.||.||.||||||||.||...|||.||.||.||.||.|||.|.|||||
BPUM_1381___c 100 GAAGTAGCAGATAAACAATTCTTCCTAACGGTACTGAGTACACTTATTAT 149
BSNT_02475___ 150 GGTGGTTGTTGTTGCA--GTAGTATCTGTTATCTTCTTTTATGTGATTGT 197
|||..||||.|| || ||.|||||..|.||.||||||||.||.||..|
BPUM_1381___c 150 GGTTCTTGTCGT--CATTGTTGTATCGATCATTTTCTTTTACGTCATCAT 197
BSNT_02475___ 198 GAGATTCAGAAGATCACGGGTCGGTGAGAACACGATACCGAAACAGGTAG 247
.|.|||||.|.|.||....||.||.||..|.|||||.||.||.|||||.|
BPUM_1381___c 198 TAAATTCAAACGTTCTAAAGTGGGAGAAGATACGATTCCAAAGCAGGTGG 247
BSNT_02475___ 248 AGGGGAA---TAAATTTTTAGAAATCACATGGACCGTGATCCCGATTTTG 294
|.||||| ||| ..|||||||.||.|||||.|.|||.||||||.|.
BPUM_1381___c 248 AAGGGAACCGTAA---CCTAGAAATTACGTGGACAGCGATTCCGATTCTT 294
BSNT_02475___ 295 CTGCTCATTATTCTTGTGATTCCTGTTGTATTATATACGCTAGAGCTAGC 344
||.|||||||||||.||..|.||.|||||...|||.|||||.|||||.|.
BPUM_1381___c 295 CTCCTCATTATTCTCGTTGTGCCAGTTGTGGCATACACGCTTGAGCTTGG 344
BSNT_02475___ 345 GGACACATCACCAATGGATAAAAAAGGCCGCAAAGCTGAGGATGCTCTTG 394
|||.|||....|.||||||||.|||...||..|..||||..|..|.||||
BPUM_1381___c 345 GGATACAAGCGCTATGGATAAGAAAAAACGAGATCCTGAAAAGACACTTG 394
BSNT_02475___ 395 TAGTCAATGTTAGGGCAAATTTATACTGGTGGGAGTTTGAGTACCCTGAT 444
|.||||||||.||.||.|.||||||.||||||||.||.||.|||||||||
BPUM_1381___c 395 TTGTCAATGTAAGAGCCAGTTTATATTGGTGGGAATTCGAATACCCTGAT 444
BSNT_02475___ 445 TACGACATTATCACAAGCCAGGAGCTGATTGTACCGACAGATCAGCGTGT 494
||.|..|||.|.|||||.||.||..|.|||||||||||||||||....||
BPUM_1381___c 445 TATGGGATTGTTACAAGTCAAGAATTAATTGTACCGACAGATCAAAAGGT 494
BSNT_02475___ 495 ATATTTTAATTTAAAAGCCTCTGATGTAAAACATTCCTTCTGGATTCCTT 544
.||.|||||..|.|||||.||||||||.|||||.||.||||||.||||.|
BPUM_1381___c 495 GTACTTTAAGCTGAAAGCATCTGATGTGAAACACTCTTTCTGGGTTCCAT 544
BSNT_02475___ 545 CAGTTGGAGGAAAACTTGATACGAATACGGATAATGAAAATAAGTTCTTC 594
|||.|||.||.|||.|||||||.||.||.||.||||||||.|||||.|..
BPUM_1381___c 545 CAGCTGGCGGTAAAATTGATACAAACACAGACAATGAAAACAAGTTTTAT 594
BSNT_02475___ 595 CTGACATTTGATTCAAAACGAAGCAAAGAGGCAGGAG-ATATGTTTTTTG 643
.|.||.||||||||||||||||..|||||.||||||| |||| ||.|..|
BPUM_1381___c 595 TTAACCTTTGATTCAAAACGAACGAAAGATGCAGGAGAATAT-TTCTACG 643
BSNT_02475___ 644 GGAAGTGTGCAGAGCTTTGCGGCCCTTCACATGCGCTGATGGATTTTAAG 693
||||.|||||.|||||||||||.||.||.|||||..|.|||||.|||||.
BPUM_1381___c 644 GGAAATGTGCGGAGCTTTGCGGTCCATCGCATGCTTTAATGGACTTTAAA 693
BSNT_02475___ 694 GTGAAGACGATGTCTGCAA-AAGAATTTCAGGGCTGGACAAAAGAAATG- 741
||.||.|||.|.||| ||| |.||.|||...||.|||||.|||.|||||
BPUM_1381___c 694 GTTAAAACGCTTTCT-CAAGATGAGTTTTTAGGATGGACGAAAAAAATGG 742
BSNT_02475___ 742 --------AAAAACTATAAATCTACAGCAGAGAGCGATTTGGCT----AA 779
||.||...||.|||.||| |..|||.|.||| ||
BPUM_1381___c 743 CTGATTACAAGAAGCCTACATCCACA------AAAGATCTTGCTCTTGAA 786
BSNT_02475___ 780 GCAGGGTGAAGAACTGTTTAAAGAGAAAAACTGCCTGAGCTGCCATGCGG 829
||||||.||.|.||||||||||||||||||.|||||||.||.||.|
BPUM_1381___c 787 ----GGTGAAAAATTATTTAAAGAGAAAAACTGCTTGAGCTGTCACGCAG 832
BSNT_02475___ 830 TAGAGC-------CGAATGATAAGCGTGCAGAAGCCGCTAGAACGGCACC 872
|.|||| |||| ||..|.|||||.||.||.||.|||||
BPUM_1381___c 833 TGGAGCCTGGGGACGAA-------CGGCCGGAAGCGGCAAGGACAGCACC 875
BSNT_02475___ 873 TAACTTGGCGACCTTCGGTGAAAGGACAAAAGTGGCAGGGGTGAAAGAGG 922
.|||.|.||.||||||||.|||.|.||.|||||.||.||..|.|||||..
BPUM_1381___c 876 AAACCTTGCAACCTTCGGCGAACGAACGAAAGTAGCTGGAATTAAAGACA 925
BSNT_02475___ 923 CCAACAAAGAAAATGTGAAGGCTTGGCTAAAGGACCCTGACAGCATAAAG 972
..|||||||||||.|||||.||.|||||.||.||.||.||.|||.|.||.
BPUM_1381___c 926 TGAACAAAGAAAACGTGAAAGCATGGCTGAAAGATCCAGAGAGCTTTAAA 975
BSNT_02475___ 973 CCGGGGAACAAAATGACAGGCACATATCC------AAAGCTCTCAGACAG 1016
||.||.||.|||||||||||.||.||.|| |||...||||
BPUM_1381___c 976 CCAGGAAATAAAATGACAGGAACGTACCCTAAATTAAATGACTCA----- 1020
BSNT_02475___ 1017 CGAAACAGATGCGCTTTATGAATACTTAAAAGG-CTTAAAAGCGGAAAGC 1065
|||.|||||||.||||||||.||.|||||||| |||||||.|| ||.
BPUM_1381___c 1021 -GAAGCAGATGCACTTTATGAGTATTTAAAAGGACTTAAAATCG---AGT 1066
BSNT_02475___ 1066 AAGTAG 1071
||
BPUM_1381___c 1067 AA---- 1068
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