Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02464 and BPUM_1373
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:56
# Commandline: needle
# -asequence dna-align/BSNT_02464___ylaL.1.24716.seq
# -bsequence dna-align/BPUM_1373___ylaL.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02464___ylaL-BPUM_1373___ylaL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02464___ylaL-BPUM_1373___ylaL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02464___ylaL
# 2: BPUM_1373___ylaL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 544
# Identity: 334/544 (61.4%)
# Similarity: 334/544 (61.4%)
# Gaps: 122/544 (22.4%)
# Score: 953.0
#
#
#=======================================
BSNT_02464___ 1 ATGAGCGTTATCCAAGTAAAAGGCAATGTTACA-TATCCA--ATTACCAT 47
||||||.|.||.|||.|.||.||.||.| |||| || || ||.|||||
BPUM_1373___y 1 ATGAGCATCATTCAAATCAAGGGGAACG-TACAGTA--CAAGATCACCAT 47
BSNT_02464___ 48 TGATCCAAGCGTATGGATTTTTGATGATCGCAAATTT------------T 85
|||||||||.|||||||||||||||||.||||||||| |
BPUM_1373___y 48 TGATCCAAGTGTATGGATTTTTGATGACCGCAAATTTTTAATGGATTCAT 97
BSNT_02464___ 86 CGTTTGA-----CCGCAAAGGGGACAGTCAAGACACATATTTACAATCAG 130
..||||| |.||| |||.||| |.||||||
BPUM_1373___y 98 TTTTTGAAAATGCAGCA--------AGTGAAG----------AGAATCAG 129
BSNT_02464___ 131 CCGGGGATGAATC-CGACCTTGATCCGGAACGCGTCATCAGAGAGGGGCG 179
| |..||| .||.|||||.|..||.||.||.||.|||||.||.|.
BPUM_1373___y 130 C------TAGATCAGGAGCTTGACCAAGAGCGGGTGATAAGAGAAGGTCA 173
BSNT_02464___ 180 AA---TTGCCCCGCCTACATTAAAGACGGAAAAACAATATGAGAAGCAAA 226
|| || ||.|||||.|||||.||.||.|||.|.||.||||||.|||
BPUM_1373___y 174 AACACTT---CCACCTACGTTAAAAACAGAGAAAAAGTACGAGAAGGAAA 220
BSNT_02464___ 227 AACTGATGAACGGCAGTTTCGCAATGAGACTTGG-GACTGTCCTGAAAAA 275
.|||..|.|..|||||.||||..||||..||||| || |.|.||.|||||
BPUM_1373___y 221 GACTCGTCACTGGCAGCTTCGGTATGAAGCTTGGCGA-TATGCTAAAAAA 269
BSNT_02464___ 276 TGCTGAGCC----GAACAGCTCTGC-GACACAATGTGTATTTGTCACAAG 320
||||||||| ||||| ||| ||.|| |||.|.||||||||||
BPUM_1373___y 270 TGCTGAGCCGCTTGAACA----TGCGGATAC-ATGCGAATTTGTCACA-- 312
BSNT_02464___ 321 TTCGGGAAA--GG-------------CCGCCGTTTCTCTGGAAACCGCTC 355
|||| || ||.| ||||||.||.||
BPUM_1373___y 313 -----GAAACTGGTACAATTGCTGTCCCTC--TTTCTCAGGCAA------ 349
BSNT_02464___ 356 TGAACAGTATTGTCCATTTCAGTGAGGCA-GGCAAGCCGATTCA-AGAAG 403
||.|.||.||||..||||||||..| .|| ||.||.||.| ||| |||||
BPUM_1373___y 350 TGGAAAGCATTGCTCATTTCAGCCA-ACATGGTAAACCCA-TCATAGAAG 397
BSNT_02464___ 404 GCGGCCCCGTGCATATTTACTTTGAAGACCCGGTTCA--------TCACA 445
..||.||..|.||..|.||.|||| |||.||| ||||
BPUM_1373___y 398 AAGGACCAATCCACGTCTATTTTG------CGGATCAGTCCAACCTCAC- 440
BSNT_02464___ 446 AACAGCCGATTACCGATGTAAAAGAGATCGAAATCATT---TAA 486
.||||||||.|..|.|||.||||||.||| ||||| |||
BPUM_1373___y 441 -TCAGCCGATAAAAGGTGTCAAAGAGCTCG---TCATTACATAA 480
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