Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02459 and BPUM_1369

See Amino acid alignment / Visit BSNT_02459 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:56
# Commandline: needle
#    -asequence dna-align/BSNT_02459___ylaH.1.24716.seq
#    -bsequence dna-align/BPUM_1369___ylaH.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02459___ylaH-BPUM_1369___ylaH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02459___ylaH-BPUM_1369___ylaH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02459___ylaH
# 2: BPUM_1369___ylaH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 345
# Identity:     228/345 (66.1%)
# Similarity:   228/345 (66.1%)
# Gaps:          48/345 (13.9%)
# Score: 678.5
# 
#
#=======================================

BSNT_02459___      1 TTGAAT------GACGTAAGCGAACGCCTGTCGTTCTTCGCCGCT-CTAT     43
                     ||||||      ||.|||||.|||...||.||.||.|||| ||.| ||.|
BPUM_1369___y      1 TTGAATGAACAGGAAGTAAGTGAAAATCTATCCTTTTTCG-CGATGCTGT     49

BSNT_02459___     44 ATCAAGTAGA-------CCGGCAGCCTGCGGCAGGCATGTGGCTGCTGTA     86
                     .||..||.||       |||..|       .||||.||||||||.||.||
BPUM_1369___y     50 TTCGTGTCGATGAAAATCCGCAA-------ACAGGGATGTGGCTCCTATA     92

BSNT_02459___     87 CGGCACGATTTTTGTGTTGGCCGTTATTGTATTTAAGCTTGGATTTGCTA    136
                     .|||||.||..||||.||.||..|||||||.||||||||.||.|||||||
BPUM_1369___y     93 TGGCACCATCCTTGTTTTAGCAATTATTGTTTTTAAGCTCGGCTTTGCTA    142

BSNT_02459___    137 AACGGCTTCCTGTATTAAAATCTGCAGTGGTGTATGTA----TTTTTGGC    182
                     .|||..|.||..|.||||||   ||.||.||| ||.||    ||||||..
BPUM_1369___y    143 GACGTTTACCGATTTTAAAA---GCGGTCGTG-ATTTACTTGTTTTTGAT    188

BSNT_02459___    183 TTTGGGCTGCACTGTTT-TGACTTTTTTAGGGGTGTTTTTGCCCGTGGCA    231
                     |||.|||||||| |||| |.||.||..||||..|.||..||||.||.||.
BPUM_1369___y    189 TTTTGGCTGCAC-GTTTCTCACATTCCTAGGAATCTTCCTGCCAGTAGCG    237

BSNT_02459___    232 GAAGGATTGGTCGTCGCTGCGCTG--ATTTTAATCATTTACAAAATCCGG    279
                     |||||..|.|||||.||  .||||  |||||.||.|||||.||||||.||
BPUM_1369___y    238 GAAGGGCTAGTCGTGGC--AGCTGCCATTTTGATTATTTATAAAATCAGG    285

BSNT_02459___    280 CTGTATCAGT-CGAAAAAA----GGACAGTCTGCAAAAT-CATAA    318
                     |||.||| || ||||||||    |.|||||     .||| |.|||
BPUM_1369___y    286 CTGCATC-GTGCGAAAAAAGAAGGAACAGT-----GAATACGTAA    324


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