Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02442 and BPUM_1365

See Amino acid alignment / Visit BSNT_02442 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:55
# Commandline: needle
#    -asequence dna-align/BSNT_02442___yktC.1.24716.seq
#    -bsequence dna-align/BPUM_1365___suhB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02442___yktC-BPUM_1365___suhB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02442___yktC-BPUM_1365___suhB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02442___yktC
# 2: BPUM_1365___suhB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 849
# Identity:     559/849 (65.8%)
# Similarity:   559/849 (65.8%)
# Gaps:          93/849 (11.0%)
# Score: 1760.5
# 
#
#=======================================

BSNT_02442___      1 ATGACAAATTGGACGGAAATTGATGAGATTGCAAAGAAATGGATAAGAGA     50
                     ||||||||.|||..|||||||||.....||||||||...|||.|||.|||
BPUM_1365___s      1 ATGACAAACTGGGTGGAAATTGACCGTCTTGCAAAGCTTTGGGTAAAAGA     50

BSNT_02442___     51 AGCAGG-CGCGAGAATTAAACAATCCATGCATGAAAGCCTGACAATTGAA     99
                     |||||| .|| .|.||||||...||||||||.||..|.||..||||||||
BPUM_1365___s     51 AGCAGGAAGC-CGTATTAAAGCGTCCATGCAGGATGGTCTATCAATTGAA     99

BSNT_02442___    100 ACGAAATCAAATCCGAATGATTTAGTCACCAATATTGACAAAGAAACCGA    149
                     ||.|||||||||||.||||||.|.|||||.|||||.||.||||||||.||
BPUM_1365___s    100 ACAAAATCAAATCCAAATGATCTTGTCACAAATATCGATAAAGAAACAGA    149

BSNT_02442___    150 AAAGTTTTTCATTGATCGAATTCAAGAAACATTTCCGGGACATCGGATAC    199
                     |...|||||||||||....||.|||...||||||.|.|..||||..||..
BPUM_1365___s    150 ACGTTTTTTCATTGAAAAGATCCAATCGACATTTTCAGATCATCATATTT    199

BSNT_02442___    200 TCGGTGAAGAGGGGCAAGGAGACAAAATCCACTCACTTGAGGGAGTCGTA    249
                     |.||||||||.||.|||||.||..|..|...|||||||||.||.|||||.
BPUM_1365___s    200 TAGGTGAAGAAGGACAAGGGGAAGAGGTGACCTCACTTGATGGGGTCGTG    249

BSNT_02442___    250 TGGATTATTGATCCAATTGATGGGACGATGAATTTTGTGCACCAGCAAAG    299
                     |||||.|||||||||||.|||||.||.|||||.|||||.||.||..||.|
BPUM_1365___s    250 TGGATCATTGATCCAATCGATGGCACAATGAACTTTGTCCATCAAAAACG    299

BSNT_02442___    300 AAATTTTGCGATTTCCATTGGGATTTTTGAAAACGGTGAAGGGAAAATCG    349
                     |||.|||||.|||||.||.|||||.||||||||.||....||||||||||
BPUM_1365___s    300 AAACTTTGCCATTTCAATCGGGATATTTGAAAATGGCATTGGGAAAATCG    349

BSNT_02442___    350 GTTTAATTTATGATGTGGTGCACGATGAGCTGTATCACGCATTTAGCGGC    399
                     ||.|.||||||||.||..|.||.||.|||||.||.||.||..|.|..|| 
BPUM_1365___s    350 GTCTCATTTATGACGTCATTCATGACGAGCTTTACCATGCGATCAAAGG-    398

BSNT_02442___    400 AG-AGGGGCTTATATGAATGAAACGAAGCTGGCTCCTTTAAAAGA--AAC    446
                     || ||||||||||||||||||.||....||..||||.||||||||  .|.
BPUM_1365___s    399 AGAAGGGGCTTATATGAATGATACCCTACTTCCTCCATTAAAAGATGTAG    448

BSNT_02442___    447 CGTCATTGAAGAAGCGATTCTTGCCATTAATGCAACATGGGTAACGGAAA    496
                     ||  ||||||.||||.||..|.|.||||||..|.||.||||..|..||||
BPUM_1365___s    449 CG--ATTGAAAAAGCCATCGTGGGCATTAACCCGACCTGGGCGATTGAAA    496

BSNT_02442___    497 AC----AGAAGAATTGAT--CAAAGTGTGTTAGCGCCACTT----GTGAA    536
                     .|    |    ..|||||  .|||  ..|||.||.|.||||    |||| 
BPUM_1365___s    497 GCCCTTA----TTTTGATGCGAAA--CCGTTCGCCCGACTTGTGCGTGA-    539

BSNT_02442___    537 AAGAGTCAGAGGCAC----ACGCTCATACGGTTCTGCCGCTTTAGAGCTG    582
                        .||.|||||.||    |||.|    .||.||.||.||.||.|||||.
BPUM_1365___s    540 ---TGTGAGAGGGACGAGAACGAT----TGGATCAGCTGCCTTGGAGCTC    582

BSNT_02442___    583 GCAAATGTCGC-GGCAGGAAGAATAGATGCTTACATCACGATGCGCCTTG    631
                     ||..||.|||| .|| ||.||||..||.||.|||.|||||.|..|.||||
BPUM_1365___s    583 GCTTATATCGCAAGC-GGCAGAAGTGACGCATACGTCACGTTAAGGCTTG    631

BSNT_02442___    632 CGCCATGGGACTACGCAGCCGGCTGTGTGCTGTTAAATGAAGTAGGAGGC    681
                     ||||.|||||.||.|||||.||||||||||||.|..|||||||||| |||
BPUM_1365___s    632 CGCCGTGGGATTATGCAGCAGGCTGTGTGCTGCTTGATGAAGTAGG-GGC    680

BSNT_02442___    682 A-TCTATACGACCATTGAAGGAGAGCCGTTTACCTTTTTAGAAAACCACA    730
                     | ||||..|.|..||..|.|||||||...|.||.||..||||.||..|||
BPUM_1365___s    681 AGTCTACTCAAATATACACGGAGAGCGCCTAACGTTCCTAGACAAAAACA    730

BSNT_02442___    731 GTGTGCTAGCCGGAAACCCATC-----------------TA------TAC    757
                     |..|..|.||.|||||.|.|||                 ||      |||
BPUM_1365___s    731 GCATCGTCGCTGGAAATCGATCCGTTTGTGAAAAAATTTTACACGATTAC    780

BSNT_02442___    758 ATAAAACG--------ATATTTGAAGAGTATCTTCATGCTGGGAAGTAG    798
                     ||||||.|        |||    ||.|.||.                  
BPUM_1365___s    781 ATAAAAGGCAGTGAAAATA----AAAAATAA------------------    807


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02442 and BPUM_1365

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
