Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_02437 and BPUM_1362

See Amino acid alignment / Visit BSNT_02437 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:55
# Commandline: needle
#    -asequence dna-align/BSNT_02437___yktA.1.24716.seq
#    -bsequence dna-align/BPUM_1362___yktA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02437___yktA-BPUM_1362___yktA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02437___yktA-BPUM_1362___yktA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02437___yktA
# 2: BPUM_1362___yktA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 291
# Identity:     183/291 (62.9%)
# Similarity:   183/291 (62.9%)
# Gaps:          45/291 (15.5%)
# Score: 507.5
# 
#
#=======================================

BSNT_02437___      1 ATGGAGTATCAATATCCGATGAATGAAGATTGGACAACCGAAGAAGCAG-     49
                     |||||.|||||||||||.|||.|.|..||.|||||.||.||.||| .|| 
BPUM_1362___y      1 ATGGAATATCAATATCCAATGGACGTCGACTGGACGACAGAGGAA-AAGA     49

BSNT_02437___     50 TGGATGTGATTGCATTTTTCCAGCAG--GTTGAGCTTGCATATGAAAAAG     97
                     |.|..||.|||.|.|||||.||  ||  |||||....||.||||||||||
BPUM_1362___y     50 TTGCGGTTATTTCGTTTTTTCA--AGCTGTTGAAAAAGCCTATGAAAAAG     97

BSNT_02437___     98 G---------GGCGGATCGTGA--AGAACTGCT--TAAAGCTTACCGCCG    134
                     |         |..|||  ||.|  |||  |.||  ||||         ||
BPUM_1362___y     98 GAATACCGAAGCAGGA--GTTATTAGA--TACTTATAAA---------CG    134

BSNT_02437___    135 TTTCAAGGAAATTGTACCGGGGAAGGCCGAGGAAAAAAAGC--TATGCGG    182
                     |||.||.||.|||||.||....||.||.||.|||||.|.||  |.|||.|
BPUM_1362___y    135 TTTTAAAGAGATTGTGCCATCAAAAGCAGAAGAAAAGACGCATTGTGCAG    184

BSNT_02437___    183 CGAGTTTGAGGAACAAAGTACATATTCTCCTTATCGCACGGTCAAACAGG    232
                     |  ||||||..||.||||....||||||||||||||.||.||.|||..||
BPUM_1362___y    185 C--GTTTGAAAAAGAAAGCGGGTATTCTCCTTATCGTACAGTGAAAACGG    232

BSNT_02437___    233 CGAGAGAATCTGA------TATCGCGAAGATTAAGATGTAA    267
                     |.||||||.|.||      ||   |.|..|||...||||||
BPUM_1362___y    233 CAAGAGAAGCAGAAGAGTCTA---CCATTATTCGTATGTAA    270


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.