Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02433 and BPUM_1358
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:55
# Commandline: needle
# -asequence dna-align/BSNT_02433___pdhD.1.24716.seq
# -bsequence dna-align/BPUM_1358___pdhD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02433___pdhD-BPUM_1358___pdhD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02433___pdhD-BPUM_1358___pdhD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02433___pdhD
# 2: BPUM_1358___pdhD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1414
# Identity: 1181/1414 (83.5%)
# Similarity: 1181/1414 (83.5%)
# Gaps: 2/1414 ( 0.1%)
# Score: 4961.0
#
#
#=======================================
BSNT_02433___ 1 ATGGTAGTAGGAGATTTCCCTATTGAAACAGATACTCTTGTAATTGGTGC 50
||||||||||||||||||||.||.|||||||||||||||||.||.|||||
BPUM_1358___p 1 ATGGTAGTAGGAGATTTCCCAATCGAAACAGATACTCTTGTCATCGGTGC 50
BSNT_02433___ 51 GGGACCTGGCGGCTATGTAGCTGCCATCCGCGCTGCACAGCTTGGACAAA 100
.||.|||||.||.|||||||||||.||.||.|||||||||||||||||||
BPUM_1358___p 51 AGGTCCTGGTGGATATGTAGCTGCTATTCGTGCTGCACAGCTTGGACAAA 100
BSNT_02433___ 101 AAGTAACAGTCGTTGAAAAAGCAACTCTTGGAGGCGTTTGTCTGAACGTT 150
||||||||.||||||||||||.|||.|||||.||.||.|||||.||||||
BPUM_1358___p 101 AAGTAACAATCGTTGAAAAAGGAACACTTGGCGGTGTATGTCTAAACGTT 150
BSNT_02433___ 151 GGATGTATCCCTTCAAAAGCGCTGATCAATGCAGGTCACCGTTATGAGAA 200
||.|||||.|||||||||||..|.||||||||.||.||.||||..||.||
BPUM_1358___p 151 GGTTGTATTCCTTCAAAAGCATTAATCAATGCTGGCCATCGTTTCGAAAA 200
BSNT_02433___ 201 TGCAAAACATTCTGATGACATGGGAATCACTGCTGAGAATGTAACAGTTG 250
|||.||.||||||||.||||||||.||||..|||||.||.||||||||||
BPUM_1358___p 201 TGCTAAGCATTCTGAAGACATGGGTATCAAAGCTGAAAACGTAACAGTTG 250
BSNT_02433___ 251 ATTTCACAAAAGTTCAAGAATGGAAAGCTTCTGTTGTCAACAAGCTTACT 300
|||||||||||||||||||.|||||||||||||||||.|||||..|.||.
BPUM_1358___p 251 ATTTCACAAAAGTTCAAGAGTGGAAAGCTTCTGTTGTAAACAAATTAACA 300
BSNT_02433___ 301 GGCGGTGTAGCAGGTCTTCTTAAAGGCAACAAAGTAGATGTTGTAAAAGG 350
||.||.||...|||||||||||||||.||.||||||||..|.||.|||||
BPUM_1358___p 301 GGTGGAGTTCAAGGTCTTCTTAAAGGAAATAAAGTAGACATCGTTAAAGG 350
BSNT_02433___ 351 TGAAGCTTACTTTGTAGACAGCAATTCAGTTCGTGTTATGGATGAGAACT 400
|||||||||.||.|||||||||||.||.||.|||||.||||||||.||.|
BPUM_1358___p 351 TGAAGCTTATTTCGTAGACAGCAACTCTGTACGTGTAATGGATGAAAATT 400
BSNT_02433___ 401 CTGCTCAAACATACACGTTCAAAAATGCAATCATCGCTACTGGATCTCGT 450
|.||.||.||.|||||.||||||||||||||..|.||.|||||||||||.
BPUM_1358___p 401 CAGCACAGACGTACACTTTCAAAAATGCAATTCTTGCAACTGGATCTCGG 450
BSNT_02433___ 451 CCTATCGAATTGCCAAACTTCAAATATAGTGAGCGTGTCCTGAATTCAAC 500
||.||.||||||||.|..||.|||||.|..||.||.||..|.||.|||||
BPUM_1358___p 451 CCAATTGAATTGCCTACTTTTAAATACACAGACCGCGTGATCAACTCAAC 500
BSNT_02433___ 501 TGGAGCTTTGGCTCTTAAAGAAATTCCTAAAAAGCTCGTTGTTATCGGCG 550
|||.||||||||.|||||||||.|.|||||.|||.|.|||||.|||||.|
BPUM_1358___p 501 TGGTGCTTTGGCGCTTAAAGAAGTACCTAAGAAGTTAGTTGTAATCGGTG 550
BSNT_02433___ 551 GCGGATACATCGGAACTGAACTTGGAACTGCGTATGCTAACTTCGGTACT 600
|.|||||.|||||.|||||.|||||.|||||.|||||.|||||.||.||.
BPUM_1358___p 551 GTGGATATATCGGTACTGAGCTTGGTACTGCTTATGCAAACTTTGGAACA 600
BSNT_02433___ 601 GAACTTGTTATTCTTGAAGGCGGAGATGAAATTCTTCCTGGCTTCGAAAA 650
|||.||||.|||||||||||.|||||.|||||.|||||.||.||||||||
BPUM_1358___p 601 GAAGTTGTCATTCTTGAAGGTGGAGACGAAATCCTTCCAGGTTTCGAAAA 650
BSNT_02433___ 651 ACAAATGAGTTCTCTCGTTACACGCAGACTGAAGAAAAAAGGCAACGTTG 700
.||||||||.||..|.||||.|||.|..||||||||||||||.|||||||
BPUM_1358___p 651 GCAAATGAGCTCATTGGTTAAACGTAACCTGAAGAAAAAAGGAAACGTTG 700
BSNT_02433___ 701 AAATCCATACAAACGCGATGGCTAAAGGCGTTGAAGAAAGACCAGACGGC 750
||||||||||||||||..|.||.||||||||||||||||.|.|.||.||.
BPUM_1358___p 701 AAATCCATACAAACGCTCTTGCAAAAGGCGTTGAAGAAAAATCTGATGGT 750
BSNT_02433___ 751 GTAACAGTTACTTTCGAAGTAAAAGGCGAAGAAAAAACGGTTGATGCTGA 800
||.||.||||||||||||||||||||.|||||||||||.|||||||||||
BPUM_1358___p 751 GTCACTGTTACTTTCGAAGTAAAAGGTGAAGAAAAAACAGTTGATGCTGA 800
BSNT_02433___ 801 TTACGTA-TTGATTACAGTAGGACGCCGTCCAAACACTGATGAGCTTGGT 849
||||||| ||| |.||.||.||.||.|||||||||||.||||||||||||
BPUM_1358___p 801 TTACGTACTTG-TGACTGTTGGTCGTCGTCCAAACACAGATGAGCTTGGT 849
BSNT_02433___ 850 CTTGAGCAAGTCGGTATCGAAATGACGGACCGCGGTATTGTGAAAACTGA 899
|||||||||||.|||.|.|||.|.||.||||||||..||||.|||||.||
BPUM_1358___p 850 CTTGAGCAAGTTGGTGTTGAATTAACTGACCGCGGAGTTGTCAAAACAGA 899
BSNT_02433___ 900 CAAACAGTGCCGCACAAACGTACCTAACATTTATGCAATCGGTGATATCA 949
||||||.|||||.||||.||||.|||||||.||||||||.|||||.|||.
BPUM_1358___p 900 CAAACAATGCCGTACAAGCGTATCTAACATCTATGCAATTGGTGACATCG 949
BSNT_02433___ 950 TCGAAGGACCGCCGCTTGCTCATAAAGCATCTTACGAAGGTAAAATCGCT 999
|.||.|||||.||.|||||.||.|||||.|||||||||||||||||.||.
BPUM_1358___p 950 TTGATGGACCACCACTTGCACACAAAGCTTCTTACGAAGGTAAAATTGCA 999
BSNT_02433___ 1000 GCAGAAGCTATCGCTGGAGAGCCTGCAGAAATCGATTACCTTGGTATTCC 1049
||.|||||.||||||||||||||.||.|||||.|||||||||||||||||
BPUM_1358___p 1000 GCTGAAGCAATCGCTGGAGAGCCAGCTGAAATTGATTACCTTGGTATTCC 1049
BSNT_02433___ 1050 TGCGGTTGTTTTCTCTGAGCCTGAACTTGCATCAGTTGGTTACACTGAAG 1099
|||.|||||.|||||||||||.|||||||||.|.|||||.||||||||||
BPUM_1358___p 1050 TGCTGTTGTATTCTCTGAGCCAGAACTTGCAACTGTTGGATACACTGAAG 1099
BSNT_02433___ 1100 CACAGGCGAAAGAAGAAGGTCTTGACATTGTTGCTGCTAAATTCCCATTT 1149
||.|.||.|||||||||||..|.|||||.|||||.||.|||||||||||.
BPUM_1358___p 1100 CAGAAGCAAAAGAAGAAGGAATCGACATCGTTGCAGCGAAATTCCCATTC 1149
BSNT_02433___ 1150 GCAGCAAACGGCCGCGCGCTTTCTCTTAACGAAACAGACGGCTTCATGAA 1199
|||||||||||.||.||.|||||||||.|.|.|||.||.|||||||||||
BPUM_1358___p 1150 GCAGCAAACGGACGTGCACTTTCTCTTGATGCAACTGATGGCTTCATGAA 1199
BSNT_02433___ 1200 GCTGATCACTCGTAAAGAGGACGGTCTTGTGATCGGTGCGCAAATCGCCG 1249
|.|||||||||||||||||||.|||||||||||||||||.||||||||.|
BPUM_1358___p 1200 GATGATCACTCGTAAAGAGGATGGTCTTGTGATCGGTGCACAAATCGCAG 1249
BSNT_02433___ 1250 GAGCAAGTGCTTCTGATATGATTTCTGAATTAAGCCTAGCGATTGAAGGC 1299
|.|...|.|||||||||||||||||.||..|.|||||.||.||.||||..
BPUM_1358___p 1250 GTGTTGGCGCTTCTGATATGATTTCAGAGCTTAGCCTTGCAATCGAAGCT 1299
BSNT_02433___ 1300 GGCATGACTGCTGAAGATATCGCGATGACAATTCACGCTCACCCAACATT 1349
||..|||||||||||||||||||.||||||||||||||.||||||||.||
BPUM_1358___p 1300 GGAGTGACTGCTGAAGATATCGCAATGACAATTCACGCACACCCAACTTT 1349
BSNT_02433___ 1350 GGGCGAAATCACAATGGAAGCTGCTGAAGTGGCAATCGGAAGTCCGATTC 1399
.||.|||||.|||||||||.|.||||||||.|||||||||||.||.||.|
BPUM_1358___p 1350 AGGTGAAATTACAATGGAAACGGCTGAAGTAGCAATCGGAAGCCCAATCC 1399
BSNT_02433___ 1400 ACATCGTAAAATAA 1413
|.||||||||||||
BPUM_1358___p 1400 ATATCGTAAAATAA 1413
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