Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02428 and BPUM_1354
See
Amino acid alignment /
Visit
BSNT_02428 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:54
# Commandline: needle
# -asequence dna-align/BSNT_02428.1.24716.seq
# -bsequence dna-align/BPUM_1354___ykyA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02428-BPUM_1354___ykyA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02428-BPUM_1354___ykyA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02428
# 2: BPUM_1354___ykyA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 733
# Identity: 285/733 (38.9%)
# Similarity: 285/733 (38.9%)
# Gaps: 365/733 (49.8%)
# Score: 715.5
#
#
#=======================================
BSNT_02428 0 -------------------------------------------------- 0
BPUM_1354___y 1 ATGAAACAAATAAGAAGAAGCATGAAAGCAGGTGCTGCTTTAGCGGGGAT 50
BSNT_02428 0 -------------------------------------------------- 0
BPUM_1354___y 51 ATGTACCCTTTTGCTGACGGGATGCGGTGGTCAAAGTTCGTTTCATGACA 100
BSNT_02428 0 -------------------------------------------------- 0
BPUM_1354___y 101 TGCAAGAGGCAATGACGAAAATGAGCGAAAAAGAGGCATCCTTTGAAAAA 150
BSNT_02428 0 -------------------------------------------------- 0
BPUM_1354___y 151 GAGCAAGGTACACTGCAAAGCTATGAGAAAAAAGAGCAACAGCTCTATAA 200
BSNT_02428 1 -------------------------------------TTGT--TGCTTTA 11
.||| .||.||
BPUM_1354___y 201 AAAAATGATTCAAACCACAAAGAATCACACAAAAACAGTGTCAAGCCTT- 249
BSNT_02428 12 TCTAATTAAGGCGCTTGAAAATGTCAGC-AAGCGCGAAGAACACCT-AAA 59
|||.| |.|||||||.|.|..|| |||| ||..|.||||||||..| |||
BPUM_1354___y 250 TCTGA-TCAGGCGCTAGCATCTG-CAGCGAAAAGAGAAGAACATTTGAAA 297
BSNT_02428 60 GCTTGAAAATGACAGCATGAAAAAATCGGAAACAGAATTTGAGGAAGCAA 109
.| .|||||.|||||||||.|..|||||.|||.|||||| .|
BPUM_1354___y 298 AC-AGAAAAAGACAGCATGGATGAATCGAAAAAAGAATT---------GA 337
BSNT_02428 110 AAACG---------TCAGCGGAACATATTAAGGAAAAAGACATAAAAGAA 150
||||| ||.|||||||.|||..|.||.|..||..||||||||
BPUM_1354___y 338 AAACGGTCAAAGAATCTGCGGAACGTATACAAGATACGGATTTAAAAGAA 387
BSNT_02428 151 AAGGCCGATGCCGCAGCAAAC---CATA----TGGAGAAAAGATATACAT 193
||.||.|||| |||| ||.| |.||||||||||||.|||
BPUM_1354___y 388 AAAGCAGATG-------AAACGGTCAAATCGCTTGAGAAAAGATATGCAT 430
BSNT_02428 194 CATATGGCACTA--TGTATAAAGAGTATAAAAAAGCACTTGAGCTTAATA 241
|.|||| ||.| |.||.||.||.|||.||||||| |||.||..
BPUM_1354___y 431 CGTATG--ACCAGCTTTACAAGGAATATCAAAAAGC------GCTGAAAC 472
BSNT_02428 242 AAAAAC----TGTATATGCAGC-TGAAAGACAAAGATTTGAC-------- 278
||.|.| |.|||||..|.| |.|||||..||| |||
BPUM_1354___y 473 AAGATCAGCATTTATATCAATCTTTAAAGAAGAAG----GACTTAGGATA 518
BSNT_02428 279 --AAGAG--ATGATCTGGATCA----GCAGATCGATAAAGTCAATGCTTC 320
||||| |..||| || |.||| || ||.||...|||
BPUM_1354___y 519 TAAAGAGCTAAAATC-----CAAACTGAAGA-CG-----GTGAACCGTTC 557
BSNT_02428 321 TTAT----------GAAAAGATCCTTAAATATAGCGGAGAATTTAATGAA 360
|||| |||||||...|.||| |.||||||.||
BPUM_1354___y 558 TTATAGCAAAGTCAGAAAAGAAGGTAAAA----------AGTTTAATCAA 597
BSNT_02428 361 CAAACCGAAA-------AAT-ATAATAAAGCCCGGGAAGATTTATATGAT 402
.|.|| ||| ||| |..||||| .|.|.|||.|.|.|.
BPUM_1354___y 598 TATAC--AAAGCAATTGAATGAGCATAAA------CAGGCTTTGTCTAAA 639
BSNT_02428 403 GCTGCAGGCTATC--GTGT-GAAAAAGAGCTGA 432
||.|||| ||| |.|| |||||||||||||
BPUM_1354___y 640 GCGGCAG---ATCAAGAGTCGAAAAAGAGCTGA 669
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.