Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02419 and BPUM_1349
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:54
# Commandline: needle
# -asequence dna-align/BSNT_02419___ykqC.1.24716.seq
# -bsequence dna-align/BPUM_1349___ykqC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02419___ykqC-BPUM_1349___ykqC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02419___ykqC-BPUM_1349___ykqC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02419___ykqC
# 2: BPUM_1349___ykqC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1672
# Identity: 1336/1672 (79.9%)
# Similarity: 1336/1672 (79.9%)
# Gaps: 8/1672 ( 0.5%)
# Score: 5288.0
#
#
#=======================================
BSNT_02419___ 1 ATGAAATTTGTAAAAAATGATCAGACTGCTGTTTTCGCCCTCGGAGGTTT 50
|||||||||||||||||.||||||.|.||.|||||.||.|||||.||.||
BPUM_1349___y 1 ATGAAATTTGTAAAAAACGATCAGGCGGCAGTTTTTGCGCTCGGCGGATT 50
BSNT_02419___ 51 GGGCGAAATCGGTAAAAATACGTACGCGGTGCAATTCCAGGATGAAATTG 100
.|||||.|||||||||||.|||||.|..||.|||||.||.||||||||..
BPUM_1349___y 51 AGGCGAGATCGGTAAAAACACGTATGGCGTTCAATTTCAAGATGAAATCA 100
BSNT_02419___ 101 TACTGATTGATGCGGGGATCAAGTTTCCCGAGGACGAACTGCTCGGAATT 150
|..|.||||||||.||.||.|||||.||.||.||.||.||.||.||||||
BPUM_1349___y 101 TTTTAATTGATGCTGGTATTAAGTTCCCTGAAGATGAGCTTCTTGGAATT 150
BSNT_02419___ 151 GACTACGTCATCCCTGATTATACGTATTTAGTCAAAAACGAAGATAAAAT 200
|||||||||||||||||.||||||||.|||||.|||||||||||||||||
BPUM_1349___y 151 GACTACGTCATCCCTGACTATACGTACTTAGTTAAAAACGAAGATAAAAT 200
BSNT_02419___ 201 TAAAGGGCTTTTTATCACCCACGGGCACGAAGACCACATCGGCGGTATTC 250
.|||||.|||||.|||||.|||||.||.||||||||||||||||||||.|
BPUM_1349___y 201 CAAAGGTCTTTTCATCACTCACGGACATGAAGACCACATCGGCGGTATCC 250
BSNT_02419___ 251 CATACCTGCTTAGACAAGTGAATATTCCTGTATACGGCGGAAAACTCGCG 300
|.|||||.||.|..||||||||||||||.||.||||||||.||||||||.
BPUM_1349___y 251 CTTACCTTCTCAAGCAAGTGAATATTCCAGTTTACGGCGGCAAACTCGCA 300
BSNT_02419___ 301 ATCGGCTTACTTCGGAATAAACTTGAAGAGCATGGATTATTAAGACAGAC 350
||||||.|||||||.||||||.|.|||||.|||||..|.||.||||||||
BPUM_1349___y 301 ATCGGCCTACTTCGTAATAAATTGGAAGAACATGGTCTCTTGAGACAGAC 350
BSNT_02419___ 351 GAAACTGAACATTATCGGCGAGGATGATATTGTAAAGTTCCGCAAAACGG 400
.|||||..|||||.|.|..||.||.||||...|.||.||..|.|||||.|
BPUM_1349___y 351 AAAACTTCACATTTTTGAAGAAGAAGATACCATTAAATTTAGAAAAACAG 400
BSNT_02419___ 401 CTGTGTCATTCTTCAGAACAACACACAGTATTCCGGATTCCTACGGCATT 450
|||||||.|||||.||||||||.|||||||||||.|||||.||.||.|||
BPUM_1349___y 401 CTGTGTCTTTCTTTAGAACAACTCACAGTATTCCAGATTCTTATGGAATT 450
BSNT_02419___ 451 GTTGTAAAAACGCCGCCCGGAAACATCGTACATACTGGGGATTTTAAATT 500
||.||.||.||.||.||.||.||||||||||||||.||||||||.||.||
BPUM_1349___y 451 GTCGTGAAGACACCTCCTGGTAACATCGTACATACAGGGGATTTCAAGTT 500
BSNT_02419___ 501 CGACTTTACTCCAGTCGGCGAGCCGGCAAACTTAACGAAAATGGCCGAAA 550
.||||||||.||.||.|||||.||.||.||||||||.||||||||.||||
BPUM_1349___y 501 TGACTTTACGCCTGTTGGCGAACCTGCTAACTTAACAAAAATGGCTGAAA 550
BSNT_02419___ 551 TCGGTAAAGAAGGCGTTTTGTGCCTTCTTTCAGACAGCACAAACAGTGAA 600
||||.||||||||||||.|.||.|||.|.||.||.||.||||||||||||
BPUM_1349___y 551 TCGGGAAAGAAGGCGTTCTATGTCTTTTATCCGATAGTACAAACAGTGAA 600
BSNT_02419___ 601 AATCCGGAGTTTACCATGTCTGAGCGCCGTGTAGGAGAAAGCATTCATGA 650
|.|||.||.|||||.|||||.||..|.||.|||||.|||||||||.||||
BPUM_1349___y 601 ATTCCAGAATTTACGATGTCAGAAAGACGCGTAGGCGAAAGCATTGATGA 650
BSNT_02419___ 651 CATTTTCCGCAAGGTGGACGGCCGAATTATCTTCGCTACATTTGCGTCGA 700
|||.||..|.||.||.|||||.||.||.|||||.||.||.|||||.||||
BPUM_1349___y 651 CATCTTTAGAAAAGTTGACGGACGTATCATCTTTGCGACGTTTGCTTCGA 700
BSNT_02419___ 701 ATATTCACCG-CTTGCAGCAGGTAATTGAAGCTGCTGTACAAAATGGAAG 749
|.||||||.| ||| ||.||.|||||.||..|.|||||....||.||..|
BPUM_1349___y 701 ACATTCACAGACTT-CAACAAGTAATCGAGTCCGCTGTTGCCAACGGCCG 749
BSNT_02419___ 750 AAAAGTTGCCGTATTTGGACGCAGTATGGAATCGGCTATCGAAATTGGAC 799
|||||||||.||.||||||||.||||||||.||.|||||.||.|||||||
BPUM_1349___y 750 AAAAGTTGCGGTGTTTGGACGTAGTATGGAGTCTGCTATTGATATTGGAC 799
BSNT_02419___ 800 -AGACACTCGGTTATATTAACTGTCCTAAAAATACGTTTATTGAGCATAA 848
||| .||.||.||.|||||.|||||.|||||.|||||||||||.||.||
BPUM_1349___y 800 AAGA-TCTTGGCTACATTAAATGTCCGAAAAACACGTTTATTGAACACAA 848
BSNT_02419___ 849 CGAAATCAATCGTATACCTGCTAATAAAGTAACAATTTTATGTACAGGAA 898
.||||||||.||..|.||.||.||.|||||.||.||..|||||||.||||
BPUM_1349___y 849 TGAAATCAACCGCCTTCCAGCAAACAAAGTGACGATCCTATGTACTGGAA 898
BSNT_02419___ 899 GCCAAGGGGAACCAATGGCGGCGTTATCAAGAATTGCAAACGGCACACAC 948
|||||||.||.||.|||||.||..|.||..|.||||||||||||||.||.
BPUM_1349___y 899 GCCAAGGTGAGCCGATGGCTGCTCTTTCTCGTATTGCAAACGGCACTCAT 948
BSNT_02419___ 949 CGCCAAATTTCAATCAATCCTGGGGATACAGTCGTATTTTCTTCATCCCC 998
|||||.|||||.||.||||||||.||.|||||.||.||.||.||.||.||
BPUM_1349___y 949 CGCCAGATTTCGATTAATCCTGGAGACACAGTTGTTTTCTCATCTTCACC 998
BSNT_02419___ 999 TATCCCAGGCAACACAATCAGCGTGAGTCGAACAATCAACCAGCTGTATC 1048
.||.||.||.||||..||.|||||.||.||.||.||.||||||||.||.|
BPUM_1349___y 999 GATTCCTGGTAACAATATTAGCGTAAGCCGCACCATTAACCAGCTTTACC 1048
BSNT_02419___ 1049 GTGCGGGTGCTGAGGTTATTCATGGCCCTCTTAACGATATCCATACATCC 1098
||||.||.||||||||.|||||||||.|.|||||..||||.||||||||.
BPUM_1349___y 1049 GTGCTGGCGCTGAGGTCATTCATGGCTCACTTAATAATATTCATACATCT 1098
BSNT_02419___ 1099 GGTCACGGCGGACAGGAAGAACAGAAGCTGATGCTTCGTTTAATCAAACC 1148
||||||||||||||.||||||||.|||||||||||.||||||||.|||||
BPUM_1349___y 1099 GGTCACGGCGGACAAGAAGAACAAAAGCTGATGCTCCGTTTAATTAAACC 1148
BSNT_02419___ 1149 TAAATTCTTCATGCCGATTCACGGTGAGTACAGAATGCAAAAGATGCATG 1198
.||||||||.|||||||||||||||||.|||.|.||||||||.|.||||.
BPUM_1349___y 1149 AAAATTCTTTATGCCGATTCACGGTGAATACCGCATGCAAAAAACGCATA 1198
BSNT_02419___ 1199 TCAAACTTGCAACAGATTGTGGCATCCCAGAGGAAAACTGCTTTATCATG 1248
|.|||||.||.|..|||||.||.||.||.|||||||||||||||||||||
BPUM_1349___y 1199 TTAAACTGGCGAATGATTGCGGAATTCCTGAGGAAAACTGCTTTATCATG 1248
BSNT_02419___ 1249 GATAATGGTGAAGTATTAGCGCTTAAAGGCGACGAGGCTTCAGTTGCAGG 1298
||||||||||||||..|.||.||||||||||||||.||....||.||.||
BPUM_1349___y 1249 GATAATGGTGAAGTTCTTGCACTTAAAGGCGACGAAGCAAGTGTCGCTGG 1298
BSNT_02419___ 1299 AAAAATCCCGTCCGGTTCAGTGTACATTGACGGAAGCGGTATCGGTGATA 1348
.|||||.||.||.||....|||||.||.|||||||||||.||.|||||||
BPUM_1349___y 1299 CAAAATTCCATCAGGGAACGTGTATATCGACGGAAGCGGAATTGGTGATA 1348
BSNT_02419___ 1349 TTGGCAATATCGTACTT-CGTGATCGCAGAATTCTCTCTGAAGAAGGACT 1397
|.||.|||||||| ||| .|.||.|||.|.|||||.||.||||||||.||
BPUM_1349___y 1349 TCGGGAATATCGT-CTTAAGAGACCGCCGCATTCTTTCAGAAGAAGGTCT 1397
BSNT_02419___ 1398 TGTCATCGTTGTTGTCAGCATTGACATGGACGACTTCAAGATTTCAGCGG 1447
.|||||.||.||.||||||||.||.|||.|.||.|||||.||.||.||.|
BPUM_1349___y 1398 AGTCATTGTAGTCGTCAGCATGGATATGAAAGAATTCAAAATCTCTGCTG 1447
BSNT_02419___ 1448 GTCCAGATTTGATTTCCAGAGGATTTGTGTACATGAGAGAATCTGGCGAC 1497
||||.|||.|.||.||.|||||.|||||.|||||||||||||||||||||
BPUM_1349___y 1448 GTCCTGATCTCATCTCAAGAGGCTTTGTCTACATGAGAGAATCTGGCGAC 1497
BSNT_02419___ 1498 TTGATCAACGACGCTCAAGAGCTCATTTCAAATCA-CTTACAAAAAGTAA 1546
.|.|||||||||||.|||||.|||||||||||.|| ||| .|||||||||
BPUM_1349___y 1498 CTCATCAACGACGCACAAGATCTCATTTCAAAGCATCTT-GAAAAAGTAA 1546
BSNT_02419___ 1547 TGGAACGAAAAACGACTCAATGGTCTGAAATCAAAAACGAGATTACAGAC 1596
|||||||.||.||.|||||.|||||.|||||.||.|||||.|||||.|||
BPUM_1349___y 1547 TGGAACGTAAGACAACTCAGTGGTCGGAAATTAAGAACGAAATTACGGAC 1596
BSNT_02419___ 1597 ACTCTTGCGCCTTTCTTGTACGAAAAAACAAAGCGCCGTCCTATGATCCT 1646
||||||||.||||||.|.|||||||||||||..|||||.||.||||||.|
BPUM_1349___y 1597 ACTCTTGCTCCTTTCCTTTACGAAAAAACAAGACGCCGCCCAATGATCTT 1646
BSNT_02419___ 1647 GCCGATCATTATGGAGGTTTAA 1668
.|||||.||||||||.||.|||
BPUM_1349___y 1647 ACCGATTATTATGGAAGTGTAA 1668
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Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.