Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02419 and BPUM_1349

See Amino acid alignment / Visit BSNT_02419 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:54
# Commandline: needle
#    -asequence dna-align/BSNT_02419___ykqC.1.24716.seq
#    -bsequence dna-align/BPUM_1349___ykqC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02419___ykqC-BPUM_1349___ykqC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02419___ykqC-BPUM_1349___ykqC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02419___ykqC
# 2: BPUM_1349___ykqC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1672
# Identity:    1336/1672 (79.9%)
# Similarity:  1336/1672 (79.9%)
# Gaps:           8/1672 ( 0.5%)
# Score: 5288.0
# 
#
#=======================================

BSNT_02419___      1 ATGAAATTTGTAAAAAATGATCAGACTGCTGTTTTCGCCCTCGGAGGTTT     50
                     |||||||||||||||||.||||||.|.||.|||||.||.|||||.||.||
BPUM_1349___y      1 ATGAAATTTGTAAAAAACGATCAGGCGGCAGTTTTTGCGCTCGGCGGATT     50

BSNT_02419___     51 GGGCGAAATCGGTAAAAATACGTACGCGGTGCAATTCCAGGATGAAATTG    100
                     .|||||.|||||||||||.|||||.|..||.|||||.||.||||||||..
BPUM_1349___y     51 AGGCGAGATCGGTAAAAACACGTATGGCGTTCAATTTCAAGATGAAATCA    100

BSNT_02419___    101 TACTGATTGATGCGGGGATCAAGTTTCCCGAGGACGAACTGCTCGGAATT    150
                     |..|.||||||||.||.||.|||||.||.||.||.||.||.||.||||||
BPUM_1349___y    101 TTTTAATTGATGCTGGTATTAAGTTCCCTGAAGATGAGCTTCTTGGAATT    150

BSNT_02419___    151 GACTACGTCATCCCTGATTATACGTATTTAGTCAAAAACGAAGATAAAAT    200
                     |||||||||||||||||.||||||||.|||||.|||||||||||||||||
BPUM_1349___y    151 GACTACGTCATCCCTGACTATACGTACTTAGTTAAAAACGAAGATAAAAT    200

BSNT_02419___    201 TAAAGGGCTTTTTATCACCCACGGGCACGAAGACCACATCGGCGGTATTC    250
                     .|||||.|||||.|||||.|||||.||.||||||||||||||||||||.|
BPUM_1349___y    201 CAAAGGTCTTTTCATCACTCACGGACATGAAGACCACATCGGCGGTATCC    250

BSNT_02419___    251 CATACCTGCTTAGACAAGTGAATATTCCTGTATACGGCGGAAAACTCGCG    300
                     |.|||||.||.|..||||||||||||||.||.||||||||.||||||||.
BPUM_1349___y    251 CTTACCTTCTCAAGCAAGTGAATATTCCAGTTTACGGCGGCAAACTCGCA    300

BSNT_02419___    301 ATCGGCTTACTTCGGAATAAACTTGAAGAGCATGGATTATTAAGACAGAC    350
                     ||||||.|||||||.||||||.|.|||||.|||||..|.||.||||||||
BPUM_1349___y    301 ATCGGCCTACTTCGTAATAAATTGGAAGAACATGGTCTCTTGAGACAGAC    350

BSNT_02419___    351 GAAACTGAACATTATCGGCGAGGATGATATTGTAAAGTTCCGCAAAACGG    400
                     .|||||..|||||.|.|..||.||.||||...|.||.||..|.|||||.|
BPUM_1349___y    351 AAAACTTCACATTTTTGAAGAAGAAGATACCATTAAATTTAGAAAAACAG    400

BSNT_02419___    401 CTGTGTCATTCTTCAGAACAACACACAGTATTCCGGATTCCTACGGCATT    450
                     |||||||.|||||.||||||||.|||||||||||.|||||.||.||.|||
BPUM_1349___y    401 CTGTGTCTTTCTTTAGAACAACTCACAGTATTCCAGATTCTTATGGAATT    450

BSNT_02419___    451 GTTGTAAAAACGCCGCCCGGAAACATCGTACATACTGGGGATTTTAAATT    500
                     ||.||.||.||.||.||.||.||||||||||||||.||||||||.||.||
BPUM_1349___y    451 GTCGTGAAGACACCTCCTGGTAACATCGTACATACAGGGGATTTCAAGTT    500

BSNT_02419___    501 CGACTTTACTCCAGTCGGCGAGCCGGCAAACTTAACGAAAATGGCCGAAA    550
                     .||||||||.||.||.|||||.||.||.||||||||.||||||||.||||
BPUM_1349___y    501 TGACTTTACGCCTGTTGGCGAACCTGCTAACTTAACAAAAATGGCTGAAA    550

BSNT_02419___    551 TCGGTAAAGAAGGCGTTTTGTGCCTTCTTTCAGACAGCACAAACAGTGAA    600
                     ||||.||||||||||||.|.||.|||.|.||.||.||.||||||||||||
BPUM_1349___y    551 TCGGGAAAGAAGGCGTTCTATGTCTTTTATCCGATAGTACAAACAGTGAA    600

BSNT_02419___    601 AATCCGGAGTTTACCATGTCTGAGCGCCGTGTAGGAGAAAGCATTCATGA    650
                     |.|||.||.|||||.|||||.||..|.||.|||||.|||||||||.||||
BPUM_1349___y    601 ATTCCAGAATTTACGATGTCAGAAAGACGCGTAGGCGAAAGCATTGATGA    650

BSNT_02419___    651 CATTTTCCGCAAGGTGGACGGCCGAATTATCTTCGCTACATTTGCGTCGA    700
                     |||.||..|.||.||.|||||.||.||.|||||.||.||.|||||.||||
BPUM_1349___y    651 CATCTTTAGAAAAGTTGACGGACGTATCATCTTTGCGACGTTTGCTTCGA    700

BSNT_02419___    701 ATATTCACCG-CTTGCAGCAGGTAATTGAAGCTGCTGTACAAAATGGAAG    749
                     |.||||||.| ||| ||.||.|||||.||..|.|||||....||.||..|
BPUM_1349___y    701 ACATTCACAGACTT-CAACAAGTAATCGAGTCCGCTGTTGCCAACGGCCG    749

BSNT_02419___    750 AAAAGTTGCCGTATTTGGACGCAGTATGGAATCGGCTATCGAAATTGGAC    799
                     |||||||||.||.||||||||.||||||||.||.|||||.||.|||||||
BPUM_1349___y    750 AAAAGTTGCGGTGTTTGGACGTAGTATGGAGTCTGCTATTGATATTGGAC    799

BSNT_02419___    800 -AGACACTCGGTTATATTAACTGTCCTAAAAATACGTTTATTGAGCATAA    848
                      ||| .||.||.||.|||||.|||||.|||||.|||||||||||.||.||
BPUM_1349___y    800 AAGA-TCTTGGCTACATTAAATGTCCGAAAAACACGTTTATTGAACACAA    848

BSNT_02419___    849 CGAAATCAATCGTATACCTGCTAATAAAGTAACAATTTTATGTACAGGAA    898
                     .||||||||.||..|.||.||.||.|||||.||.||..|||||||.||||
BPUM_1349___y    849 TGAAATCAACCGCCTTCCAGCAAACAAAGTGACGATCCTATGTACTGGAA    898

BSNT_02419___    899 GCCAAGGGGAACCAATGGCGGCGTTATCAAGAATTGCAAACGGCACACAC    948
                     |||||||.||.||.|||||.||..|.||..|.||||||||||||||.||.
BPUM_1349___y    899 GCCAAGGTGAGCCGATGGCTGCTCTTTCTCGTATTGCAAACGGCACTCAT    948

BSNT_02419___    949 CGCCAAATTTCAATCAATCCTGGGGATACAGTCGTATTTTCTTCATCCCC    998
                     |||||.|||||.||.||||||||.||.|||||.||.||.||.||.||.||
BPUM_1349___y    949 CGCCAGATTTCGATTAATCCTGGAGACACAGTTGTTTTCTCATCTTCACC    998

BSNT_02419___    999 TATCCCAGGCAACACAATCAGCGTGAGTCGAACAATCAACCAGCTGTATC   1048
                     .||.||.||.||||..||.|||||.||.||.||.||.||||||||.||.|
BPUM_1349___y    999 GATTCCTGGTAACAATATTAGCGTAAGCCGCACCATTAACCAGCTTTACC   1048

BSNT_02419___   1049 GTGCGGGTGCTGAGGTTATTCATGGCCCTCTTAACGATATCCATACATCC   1098
                     ||||.||.||||||||.|||||||||.|.|||||..||||.||||||||.
BPUM_1349___y   1049 GTGCTGGCGCTGAGGTCATTCATGGCTCACTTAATAATATTCATACATCT   1098

BSNT_02419___   1099 GGTCACGGCGGACAGGAAGAACAGAAGCTGATGCTTCGTTTAATCAAACC   1148
                     ||||||||||||||.||||||||.|||||||||||.||||||||.|||||
BPUM_1349___y   1099 GGTCACGGCGGACAAGAAGAACAAAAGCTGATGCTCCGTTTAATTAAACC   1148

BSNT_02419___   1149 TAAATTCTTCATGCCGATTCACGGTGAGTACAGAATGCAAAAGATGCATG   1198
                     .||||||||.|||||||||||||||||.|||.|.||||||||.|.||||.
BPUM_1349___y   1149 AAAATTCTTTATGCCGATTCACGGTGAATACCGCATGCAAAAAACGCATA   1198

BSNT_02419___   1199 TCAAACTTGCAACAGATTGTGGCATCCCAGAGGAAAACTGCTTTATCATG   1248
                     |.|||||.||.|..|||||.||.||.||.|||||||||||||||||||||
BPUM_1349___y   1199 TTAAACTGGCGAATGATTGCGGAATTCCTGAGGAAAACTGCTTTATCATG   1248

BSNT_02419___   1249 GATAATGGTGAAGTATTAGCGCTTAAAGGCGACGAGGCTTCAGTTGCAGG   1298
                     ||||||||||||||..|.||.||||||||||||||.||....||.||.||
BPUM_1349___y   1249 GATAATGGTGAAGTTCTTGCACTTAAAGGCGACGAAGCAAGTGTCGCTGG   1298

BSNT_02419___   1299 AAAAATCCCGTCCGGTTCAGTGTACATTGACGGAAGCGGTATCGGTGATA   1348
                     .|||||.||.||.||....|||||.||.|||||||||||.||.|||||||
BPUM_1349___y   1299 CAAAATTCCATCAGGGAACGTGTATATCGACGGAAGCGGAATTGGTGATA   1348

BSNT_02419___   1349 TTGGCAATATCGTACTT-CGTGATCGCAGAATTCTCTCTGAAGAAGGACT   1397
                     |.||.|||||||| ||| .|.||.|||.|.|||||.||.||||||||.||
BPUM_1349___y   1349 TCGGGAATATCGT-CTTAAGAGACCGCCGCATTCTTTCAGAAGAAGGTCT   1397

BSNT_02419___   1398 TGTCATCGTTGTTGTCAGCATTGACATGGACGACTTCAAGATTTCAGCGG   1447
                     .|||||.||.||.||||||||.||.|||.|.||.|||||.||.||.||.|
BPUM_1349___y   1398 AGTCATTGTAGTCGTCAGCATGGATATGAAAGAATTCAAAATCTCTGCTG   1447

BSNT_02419___   1448 GTCCAGATTTGATTTCCAGAGGATTTGTGTACATGAGAGAATCTGGCGAC   1497
                     ||||.|||.|.||.||.|||||.|||||.|||||||||||||||||||||
BPUM_1349___y   1448 GTCCTGATCTCATCTCAAGAGGCTTTGTCTACATGAGAGAATCTGGCGAC   1497

BSNT_02419___   1498 TTGATCAACGACGCTCAAGAGCTCATTTCAAATCA-CTTACAAAAAGTAA   1546
                     .|.|||||||||||.|||||.|||||||||||.|| ||| .|||||||||
BPUM_1349___y   1498 CTCATCAACGACGCACAAGATCTCATTTCAAAGCATCTT-GAAAAAGTAA   1546

BSNT_02419___   1547 TGGAACGAAAAACGACTCAATGGTCTGAAATCAAAAACGAGATTACAGAC   1596
                     |||||||.||.||.|||||.|||||.|||||.||.|||||.|||||.|||
BPUM_1349___y   1547 TGGAACGTAAGACAACTCAGTGGTCGGAAATTAAGAACGAAATTACGGAC   1596

BSNT_02419___   1597 ACTCTTGCGCCTTTCTTGTACGAAAAAACAAAGCGCCGTCCTATGATCCT   1646
                     ||||||||.||||||.|.|||||||||||||..|||||.||.||||||.|
BPUM_1349___y   1597 ACTCTTGCTCCTTTCCTTTACGAAAAAACAAGACGCCGCCCAATGATCTT   1646

BSNT_02419___   1647 GCCGATCATTATGGAGGTTTAA   1668
                     .|||||.||||||||.||.|||
BPUM_1349___y   1647 ACCGATTATTATGGAAGTGTAA   1668


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