Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02402 and BPUM_1336
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:53
# Commandline: needle
# -asequence dna-align/BSNT_02402___fruA.1.24716.seq
# -bsequence dna-align/BPUM_1336___fruA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02402___fruA-BPUM_1336___fruA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02402___fruA-BPUM_1336___fruA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02402___fruA
# 2: BPUM_1336___fruA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1955
# Identity: 1436/1955 (73.5%)
# Similarity: 1436/1955 (73.5%)
# Gaps: 106/1955 ( 5.4%)
# Score: 5199.5
#
#
#=======================================
BSNT_02402___ 1 GTGAAAATAACTGAGCTTTTAACGAAGCATACGATAAAGCTT-AATATTG 49
.||||||||||.||.||..|.||.||.||.||.||.|||||| ||| |.|
BPUM_1336___f 1 ATGAAAATAACAGAACTACTCACAAAACAGACCATTAAGCTTCAAT-TAG 49
BSNT_02402___ 50 AGAGCAAAGAAAAAGAAAATGTTATTGACGAAATGGTCACTGTTCTTGAT 99
|.|||.|..|.||||||...||.|||||.|||.|.|||||||||.|.|||
BPUM_1336___f 50 ACAGCCAGCAGAAAGAAGCCGTCATTGAAGAACTAGTCACTGTTTTAGAT 99
BSNT_02402___ 100 AAGGCTGGAAAGTTAAATGACCGACAAGCCTATAAAGAAGCCATTTTAAA 149
|..||.||.|||.|||||||...|.|.|.|||.||||||||..|..|.||
BPUM_1336___f 100 ACAGCAGGCAAGCTAAATGATAAAGAGGGCTACAAAGAAGCAGTGCTCAA 149
BSNT_02402___ 150 TCGCGAAAGCCAAAGCTCCACGGGTATCGGTGAAGGAATCGCTATCCCCC 199
.||.||||..||.|||||.||.|||||.|||||||||||.||||||||.|
BPUM_1336___f 150 CCGTGAAAAACAGAGCTCTACTGGTATTGGTGAAGGAATTGCTATCCCTC 199
BSNT_02402___ 200 ATGCGAAAACGGCAAGCGTTATCAACCCGGCGATCGCGTTCGGACGTTCA 249
|.||.|||||.|||||.||.|...|.||.||.||.||.||.||.||.||.
BPUM_1336___f 200 ACGCTAAAACAGCAAGTGTCAAAGAGCCTGCCATTGCATTTGGCCGCTCG 249
BSNT_02402___ 250 AAAGACGGCGTCGATTATGAATCATTAGACGGTCAGCCGGCTCA-CTTAG 298
|.||..||.||.||||||||||||.|.||.|..||||||..||| ||| |
BPUM_1336___f 250 ACAGCTGGTGTAGATTATGAATCACTGGATGCGCAGCCGAGTCATCTT-G 298
BSNT_02402___ 299 TGTTCATGATCGCGGCGACTGAAGGCGCAAACAACACTCACCTTGAAGCG 348
|.||.|||||.||.||.|||||||||||.||||||||.|||.|.||||||
BPUM_1336___f 299 TCTTTATGATTGCAGCAACTGAAGGCGCGAACAACACGCACTTAGAAGCG 348
BSNT_02402___ 349 TTGTCAAGGCTTTCAACGCTGTTAATGCGTGAAGAAATCCGTAAGCAGCT 398
.|.||..|..|.|||||.||.||.|||||||||||||||.|.||||||||
BPUM_1336___f 349 CTTTCTCGTTTATCAACACTTTTGATGCGTGAAGAAATCAGAAAGCAGCT 398
BSNT_02402___ 399 CCTTGAAGCTGAGTCTGAAGATGCCATCATCGACATTATTAATCAGCACG 448
.||||||||.|...|||||||||..|||||.||.||.||.|||..|||.|
BPUM_1336___f 399 ACTTGAAGCGGCTACTGAAGATGAAATCATTGATATCATCAATACGCATG 448
BSNT_02402___ 449 ATAAAGATGATGACGAAGAGGAAGAGGAAGAGGAAGCGGCACC------A 492
||||.||.|||||.|||||.||||||||||...|||.||..|| |
BPUM_1336___f 449 ATAAGGACGATGAAGAAGAAGAAGAGGAAGTTCAAGAGGAGCCTGTTGTA 498
BSNT_02402___ 493 GCACCTGCCGGAAA---AGGAAAAATTTTAGCGGTTACTGCATGTCCGAC 539
||| ||.|| ||..||.||||||||.||.||.||.|||||.||
BPUM_1336___f 499 GCA------GGTAAACCAGCTAAGATTTTAGCAGTAACAGCTTGTCCAAC 542
BSNT_02402___ 540 AGGTATTGCCCATACATTCATGGCTGCGGATGCCCTTAAAGAAAAAGCGA 589
|||||||||.||||||||.|||||.||.|||||..|.|||||||||||||
BPUM_1336___f 543 AGGTATTGCACATACATTTATGGCAGCAGATGCTTTGAAAGAAAAAGCGA 592
BSNT_02402___ 590 AAGAGCTTGGTGTGGAAATTAAGGTCGAAACAAATGGGTCAAGCGGCATT 639
||||..|.||..|.||.|||||.|||||||||||.||.||..||||.|||
BPUM_1336___f 593 AAGAAATGGGCATTGACATTAAAGTCGAAACAAACGGCTCTGGCGGTATT 642
BSNT_02402___ 640 AAGCACAAGCTCACTGCCCAAGAAATCGAAGATGCACCTGCAATCATTGT 689
||.|||...||.|||||..|.|||||||||||.||.||.||.||.|||||
BPUM_1336___f 643 AAACACGCCCTTACTGCAAAGGAAATCGAAGAAGCTCCAGCCATTATTGT 692
BSNT_02402___ 690 CGCAGCGGACAAGCAGGTTGAAATGGAACGTTTTAAAGGCAAGCGCGTAC 739
.||||||||||||||.||||||||||||||.|||||||||||.|..||..
BPUM_1336___f 693 GGCAGCGGACAAGCAAGTTGAAATGGAACGCTTTAAAGGCAAACATGTCA 742
BSNT_02402___ 740 TTCAAGTTCCTGTAACGGCGGGTATCAGACGTCCGCAAGAGCTTATCGAA 789
||.||||.|||||.||.||.||.|||.|.||||||||.|||.|.||.|||
BPUM_1336___f 743 TTGAAGTACCTGTGACAGCAGGAATCCGTCGTCCGCAGGAGTTGATTGAA 792
BSNT_02402___ 790 AAAGCGATGAATCAAGATGCGCCGATTTATCAAGGCAGCGGCGGCGGTTC 839
|||||..|.|||||||||||||||||.|||.|||||...||||||.|||
BPUM_1336___f 793 AAAGCAGTTAATCAAGATGCGCCGATCTATAAAGGCTCTGGCGGCAGTT- 841
BSNT_02402___ 840 AGCAGCTTCAAACGACGATGAAGA-------AGCGAAAGGCAAGTCTGGA 882
|||||||.|||||..|.|| .|| |||||.| ||
BPUM_1336___f 842 -----CTTCAAAAGACGAACATGAGTCATCTGGC-AAAGGGA------GA 879
BSNT_02402___ 883 AGCGGTATCGGAAACGCGTTTTATAAGCACCTGATGAGCGGTGTCAGCAA 932
||.||| |||||.||||||.|.|||||||||||.|||||
BPUM_1336___f 880 AGTGGT------------TTTTACAAGCACTTAATGAGCGGTGTAAGCAA 917
BSNT_02402___ 933 CATGCTTCCGTTCGTAGTCGGCGGCGGTATTCTCGTTGCGATTTCATTCT 982
|||||||||.||.||.|||||.|||||||||||.|||||.||||||||||
BPUM_1336___f 918 CATGCTTCCATTTGTTGTCGGAGGCGGTATTCTTGTTGCAATTTCATTCT 967
BSNT_02402___ 983 TCTGGGGAATTCACTCTGCTGATCCGAATGATCCTAGCTACAACACGTTT 1032
|||||||||||.||||.||.|||||.||.||.|||...|..||..|.|||
BPUM_1336___f 968 TCTGGGGAATTAACTCAGCAGATCCTAAAGACCCTTCATTTAATTCATTT 1017
BSNT_02402___ 1033 GCAGCAGCATTAAACTTTATCGGCGGCGACAATGCA------TTAAAACT 1076
|||||.|.||||||....||.|||||.||.|||||| |||
BPUM_1336___f 1018 GCAGCTGTATTAAAAGGAATTGGCGGAGATAATGCACTTGCCTTA----- 1062
BSNT_02402___ 1077 GATTGTTGCAGTTCTGGCCGGTTTCATTGCGATGAGTATTGCAGATCGTC 1126
||.||.||.||..|.|||||.||.|||||||||||||||||||||||||
BPUM_1336___f 1063 -ATCGTGGCTGTATTAGCCGGATTTATTGCGATGAGTATTGCAGATCGTC 1111
BSNT_02402___ 1127 CTGGTTTTGCGCCTGGTATGGTCGGAGGATTTATGGCTACTCA--AGCGA 1174
|.|||||||||||.|||||||||||.||||||||||| .||| |||..
BPUM_1336___f 1112 CAGGTTTTGCGCCGGGTATGGTCGGTGGATTTATGGC--GTCAGCAGCAG 1159
BSNT_02402___ 1175 ATGCTGGATTCTTAGGCGGCTTAATTGCCGGATTCCTTGCCGGTTATGTC 1224
.||||||.|||||||||||..|.||.|||||.||||||||.|||||||||
BPUM_1336___f 1160 GTGCTGGGTTCTTAGGCGGACTCATCGCCGGTTTCCTTGCTGGTTATGTC 1209
BSNT_02402___ 1225 GTGATTTTACTGAAAAAAGTATTTACGTTTATCCCTCAGTCACTTGATGG 1274
||..|.|||||.|||||||||||.||.||..|.||.||||||||.||.||
BPUM_1336___f 1210 GTTGTGTTACTTAAAAAAGTATTCACATTCGTACCGCAGTCACTCGACGG 1259
BSNT_02402___ 1275 ATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCG 1324
|.|.|||||.|||.||.|.||.||..||||.||||||||..||||.| |
BPUM_1336___f 1260 AATTAAACCGGTTCTGCTGTATCCATTGTTTGGTATTTTCTTCACAG--G 1307
BSNT_02402___ 1325 TAT--TAATGCA----ATTTGTCGTCAATACACCTGT---AGCGGCATTT 1365
||| |.||||| ||| ||.||.|||||.|| |..|| |.
BPUM_1336___f 1308 TATCATCATGCATTACATT----GTGAACACACCAGTAAAAATGG---TG 1350
BSNT_02402___ 1366 ATGAATTTCTTAACAAACTGGCTTGAAAGCCTT--GGTACTGGAAATCTT 1413
|||.|....|||||..|.|||||||||| ||| ||||||||.||.|||
BPUM_1336___f 1351 ATGGACGGATTAACTCATTGGCTTGAAA--CTTTAGGTACTGGTAACCTT 1398
BSNT_02402___ 1414 GTGTTAATGGGTATTATCTTGGGCGGCATGATGGCGATTGATATGGGCGG 1463
||.||||||||.||||||||.|..||.||||||||.|||||||||||.||
BPUM_1336___f 1399 GTCTTAATGGGCATTATCTTAGCAGGTATGATGGCAATTGATATGGGTGG 1448
BSNT_02402___ 1464 CCCGCTTAATAAAGCAGCCTTTACGTTCGGTATCGCCATGATCGATGCAG 1513
|||..||||.|||||.||.|..||.||.|||.|.||.|||||.|.|||.|
BPUM_1336___f 1449 CCCAATTAACAAAGCGGCTTACACCTTTGGTCTTGCGATGATTGCTGCTG 1498
BSNT_02402___ 1514 GCAACTATGCGCCTCATGCAGCAATCATGGCCGGCGGTATGGTTCCTCCG 1563
|.||||||||.||.||.||.||.||.|||||.|||||.|||||.||.||.
BPUM_1336___f 1499 GAAACTATGCACCACACGCTGCTATTATGGCAGGCGGAATGGTACCACCA 1548
BSNT_02402___ 1564 CTTGGTATCGCACTTGCAACAACCATTTTCAGAAACAAATTCACTCAGCG 1613
||.|||||.|||||.||.|||||.|||||.|||||.||||||.|..|.||
BPUM_1336___f 1549 CTAGGTATTGCACTAGCTACAACAATTTTTAGAAATAAATTCTCAAAACG 1598
BSNT_02402___ 1614 TGACCGTGAAGCTGGTATTACATGCTATTTCATGGGAGCTGCTTTCGTAA 1663
||||||.|||||.||.|||||||||||.||.|||||||||||.||..|.|
BPUM_1336___f 1599 TGACCGAGAAGCAGGGATTACATGCTACTTTATGGGAGCTGCCTTTATTA 1648
BSNT_02402___ 1664 CAGAGGGAGCGATCCCATTTGCTGCGGCTGATCCGCTTCGCGTCATACCA 1713
|.||.||.|||||.||.|||||.||||||||.||.||.||.||.||.||.
BPUM_1336___f 1649 CTGAAGGGGCGATTCCGTTTGCAGCGGCTGACCCTCTACGAGTGATTCCT 1698
BSNT_02402___ 1714 GCTGCTGTAGTCGGTGCAGCTGTTGCCGGCGGATTAACTGAATTCTTCCG 1763
.|.|||||..|.||.||||||||.||.|||||||||||.||||||||..|
BPUM_1336___f 1699 TCAGCTGTCATTGGAGCAGCTGTGGCTGGCGGATTAACAGAATTCTTTAG 1748
BSNT_02402___ 1764 AGTAACGCTTCCGGCGCCTCATGGAGGAGTATTCGTAGCTTTC---ATTA 1810
|||.||||||||.||.||.||.||.|||.||||||| |||| .|.|
BPUM_1336___f 1749 AGTCACGCTTCCTGCACCGCACGGCGGACTATTCGT---TTTCTGGGTAA 1795
BSNT_02402___ 1811 CAAACCATCCGATGCTTTACCTTTTAAGTATCGTGATCGGTGCTGTCGTG 1860
||||.|||||..|.|||||..||.|.||.|||.|.||||||||.||.||.
BPUM_1336___f 1796 CAAATCATCCAGTTCTTTATATTATCAGCATCTTAATCGGTGCCGTTGTA 1845
BSNT_02402___ 1861 ATGGCAATTATCCTCGGTATCGTCAAAAAACCTGTTACAGAAA----AA- 1905
|..||.|||.|.||||||||..|.||||||||.|| |||| ||
BPUM_1336___f 1846 ACAGCGATTTTACTCGGTATTTTGAAAAAACCAGT----GAAACTAGAAG 1891
BSNT_02402___ 1906 --TAA 1908
|||
BPUM_1336___f 1892 CGTAA 1896
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