Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02387 and BPUM_1326
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:52
# Commandline: needle
# -asequence dna-align/BSNT_02387___mobB.1.24716.seq
# -bsequence dna-align/BPUM_1326___mobB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02387___mobB-BPUM_1326___mobB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02387___mobB-BPUM_1326___mobB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02387___mobB
# 2: BPUM_1326___mobB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 610
# Identity: 317/610 (52.0%)
# Similarity: 317/610 (52.0%)
# Gaps: 173/610 (28.4%)
# Score: 619.5
#
#
#=======================================
BSNT_02387___ 1 ATGGCCTTGGTCCGTC-CTTTCCCGATCGTCCAAGTTGTAGGATTTCAAA 49
||| ||.|.| |.| |.||....||..|.||.||.||.||.|.|||||
BPUM_1326___m 1 ATG--CTGGAT--GACACATTAAGCATATTACAGGTGGTCGGTTATCAAA 46
BSNT_02387___ 50 ACAGCGGGAAAACAACGTTTATTGAGCGCATTCTTGAAAAAGCCTCTGAA 99
|||||||.||.||..||||.|||| ||||| .|||| .
BPUM_1326___m 47 ACAGCGGAAAGACGTCGTTAATTG-------------AAAAG-ATCTG-T 81
BSNT_02387___ 100 CAGGGAG-TCCATTTG--------------GGCTGCCTGAAGCATCATGG 134
|||..|| |..|.||| ||||||.|.||.||.|||||
BPUM_1326___m 82 CAGCTAGCTGTACTTGATGGGCTGAAGCTAGGCTGCTTTAAACACCATGG 131
BSNT_02387___ 135 TCACGGCGGTGAACCGCA-AACG-CTCACGGAAGGAAAAGACACGGACCG 182
.||.||||||.||| || |.|| ||...|.|||.|||||||||.||.||
BPUM_1326___m 132 ACATGGCGGTAAAC--CAGATCGTCTTTTGAAAGAAAAAGACACCGATCG 179
BSNT_02387___ 183 TTA---CAAGGCG---GCAGGTGCTGATGTAACAGCAGTAGAAGGTGCTG 226
.|| |..|||| |||..|||.|.|| || ||.|||||.|..|
BPUM_1326___m 180 ATATGTCGGGGCGGGTGCATTTGCCGCTG-----GC-GTGGAAGGGGAGG 223
BSNT_02387___ 227 GTGTGTTACAGCTGACTGCCCGCCGCAATTGGGATTTGGCACGGCTGATT 276
|||..|| |.||| ||..|||...|||| ||.
BPUM_1326___m 224 GTGAATT-----TCACT-----------TTTCGATGCAGCAC-----ATC 252
BSNT_02387___ 277 GAGTTATACCAATTTCTCGAAACAGACTG--------TCTTC-------- 310
..||||.|.|||||.|| |||..|| |||||
BPUM_1326___m 253 ACGTTAAAGCAATTGCT-----CAGCATGTGTCAGCATCTTCCATTAGAC 297
BSNT_02387___ 311 -------TGATTGAAGGCTTTAAAAAAGCCTCTTATCCTAAAGTGGTTAT 353
||||.|||||.|.||||.|.||..|.||.|..|||.|..||
BPUM_1326___m 298 GCAGTCTTGATAGAAGGGTATAAACAGGCACCATACCGCAAAATCATT-- 345
BSNT_02387___ 354 CCTAAGTGAA-AAGGAAGATCTGGAAGCGCTGCAAGCAGTAAATA-TAAT 401
|..||||| ||.||||| ||| ||| || |.||
BPUM_1326___m 346 --TGTGTGAAGAATGAAGA---GGA---GCT------------TATTGAT 375
BSNT_02387___ 402 C-GCCATCA---TC---TATAGAAAAA----------------AAGAGCA 428
| ..||.|| || |||||||..| |||||
BPUM_1326___m 376 CTTTCAACACTTTCCAATATAGAAGCAGCTATTTATTTTTCTCAAGAG-- 423
BSNT_02387___ 429 TATGACAG--AGCATCAGGGATTA-------CCCGT-TTTTCATGCGGAT 468
|..||| ||| ||...|||| ||.|| |||||| ||...|
BPUM_1326___m 424 --TTTCAGTTAGC--CAAAAATTATTCTTTTCCAGTGTTTTCA-GCCTTT 468
BSNT_02387___ 469 GATCCGGTTGCCGTGGACTTTGTGCTTTCAC--AGCTGAAGGG----GGA 512
||...||.|| ||...||.||.||.|.|.|| | .||||||| ||
BPUM_1326___m 469 GAAAAGGATG-CGAATACATTTTGTTATAACTTA-TTGAAGGGAGGCGG- 515
BSNT_02387___ 513 ATCTGCATAA 522
.|||...|.|
BPUM_1326___m 516 CTCTTTTTGA 525
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