Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02385 and BPUM_1325
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:51
# Commandline: needle
# -asequence dna-align/BSNT_02385___moeA.1.24716.seq
# -bsequence dna-align/BPUM_1325___moeA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02385___moeA-BPUM_1325___moeA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02385___moeA-BPUM_1325___moeA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02385___moeA
# 2: BPUM_1325___moeA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1370
# Identity: 900/1370 (65.7%)
# Similarity: 900/1370 (65.7%)
# Gaps: 169/1370 (12.3%)
# Score: 2665.5
#
#
#=======================================
BSNT_02385___ 1 ATGCTGGAGAAAAGA--ACA-CCGATACCGGTAGACGAGGCAGTTCGGCG 47
.||.||| ||||| .|| ||.||.||.|||.|.||.||..|||.|..
BPUM_1325___m 1 GTGATGG---AAAGACGTCAGCCAATTCCAGTACAAGAAGCCATTCAGAA 47
BSNT_02385___ 48 TGTCTGCCATTTTCAAAAACAAGGTGAAACAGAATGGGTGGCGCTTGAAG 97
.|||...||.|.|.||||..|.||..||..|||||||||| .|||.|||
BPUM_1325___m 48 AGTCCATCAATATGAAAAGGATGGACAAGTAGAATGGGTG--CCTTTAAG 95
BSNT_02385___ 98 --ACAGCCTTCATCGGTTTTTAGCCGAAGATATAACTGCGGATCACCACG 145
|.||||||.|..||||..|.||.||||||||....||.|||||..|.|
BPUM_1325___m 96 AAATAGCCTTGAAAGGTTCATTGCAGAAGATATTTTGGCAGATCATGATG 145
BSNT_02385___ 146 TCCCTGCGTTTGATCGTTCGCCATACGATGGTTTTGC-----TGTCAGAG 190
|.|||||.|||||||||||.||.||.||||||||||| .|.|||||
BPUM_1325___m 146 TTCCTGCATTTGATCGTTCCCCGTATGATGGTTTTGCACTTAGGGCAGAG 195
BSNT_02385___ 191 CGTGCGATACGGCAGAAGCTTCACGTGAAAACCCAGTTCGGTTTGAAGTT 240
|||||...||||||.|||.|.||..|.||.|||....||||.||.
BPUM_1325___m 196 -----GATACAAAAGAAGCGTCAAGCGAGCATCCGGTTGAACTTGAGGTC 240
BSNT_02385___ 241 ATTGACCATATTGGAGCAGGAGCAGTATCTGAAAAAGAAC--TTGGCCCG 288
|||||.||||||||.|||||||..||.||.|.||| ||| |.||.||.
BPUM_1325___m 241 ATTGATCATATTGGGGCAGGAGTGGTCTCAGCAAA--AACCATCGGTCCC 288
BSNT_02385___ 289 TTTCAGGCCGTACGGATTATGACTGGCGCGCAAATCCCTGAA-GGGGCAG 337
||.||.|||.|.||.||.|||||.||.||..||||||| ||| ||.|||.
BPUM_1325___m 289 TTCCAAGCCATCCGTATCATGACAGGAGCAAAAATCCC-GAATGGAGCAA 337
BSNT_02385___ 338 ATGCAGTCGTCATGATTGAACTGACTCAAACCTTTGAGGAGAATGGGAAG 387
|||..|||.|||||.||||.||||||.||||||||||..|..||||.||.
BPUM_1325___m 338 ATGTCGTCATCATGCTTGAGCTGACTAAAACCTTTGAAAAAGATGGAAAA 387
BSNT_02385___ 388 TCATTTATGTC-TTTAAAACGCCGCTTTCAGACGGGGGATAATATT---- 432
||||.|||||| .||||||..|||| |..|.|..|||||.||||||
BPUM_1325___m 388 TCATATATGTCACTTAAAAGACCGC-TGAAAAAAGGGGACAATATTTCTC 436
BSNT_02385___ 433 -TCAAAAACAGGTGAGGACGCTCAAAAAGGGAGTGTTTTACTGAGAAAGG 481
||| |||.||.||.|..|...||||||.|||..|.||.|.|||.|
BPUM_1325___m 437 GTCA-----AGGAGAAGAGGTACTTGAAGGGAATGTGATGCTCAAAAAAG 481
BSNT_02385___ 482 GTACCCGGGTGACACCAGGAGTGACGGCTCTTTTGGCAACATTCGGATAC 531
|.|||...||.||.||.||.|||||.||.||.|||||.|||||.|||||.
BPUM_1325___m 482 GAACCAAAGTTACTCCGGGCGTGACAGCCCTATTGGCGACATTTGGATAT 531
BSNT_02385___ 532 TCA-TCTGTGCCTGTCGTGAGAAAGCCTGTAGTCGGGATTATCGCAACCG 580
.|| || ||.||.||.||.|.||||||.||..|.||.||.|||.||||.|
BPUM_1325___m 532 GCAGTC-GTCCCAGTGGTCAAAAAGCCAGTGATTGGCATCATCTCAACAG 580
BSNT_02385___ 581 GTACCGAATTGCTGAATGTCAGTGATCC---GCTGGAACCGGGAAAAATC 627
||||.|||.|.||..|.||.||||||.| |.|||| |||| ||.||.
BPUM_1325___m 581 GTACAGAACTTCTTCAAGTGAGTGATGCGATGGTGGA--CGGG-AAGATT 627
BSNT_02385___ 628 CGCAACAGCAATGCGAGTATGGTATATGCGCAAGCGA---TAGAAGCAGG 674
.|.|||||.||....||||||||.|||||.|| || |.|||||.||
BPUM_1325___m 628 AGAAACAGTAACCTTAGTATGGTTTATGCCCA---GATCCTCGAAGCTGG 674
BSNT_02385___ 675 CGCAACACCGCTTTATTTAGG----GAAAATCTCTGATGAACTGGATAAA 720
.|.....||||||.||||||| | |.||||||||..|.||.|||
BPUM_1325___m 675 GGGGGAGCCGCTTGATTTAGGTGGTG----TGTCTGATGATTTTGACAAA 720
BSNT_02385___ 721 AGCTTTGCTGCAGTTAAAGAAGCGATGAAAAAGGTGGACTTCCTGATCAC 770
||||.|...|||||.||||.|||..|..|.|||||.||||||.|.|||||
BPUM_1325___m 721 AGCTATCAAGCAGTCAAAGCAGCCTTAGAGAAGGTAGACTTCTTAATCAC 770
BSNT_02385___ 771 AACTGGCGGTGTGTCAGTCGGTGACTTTGACTTTTTGCCTGCGATCTATG 820
|||.|||||.||.|||||.|||||.|||||||||.|.||.||.||.||||
BPUM_1325___m 771 AACAGGCGGAGTTTCAGTAGGTGATTTTGACTTTCTCCCCGCAATTTATG 820
BSNT_02385___ 821 AAAAACTCGGAGCGGACGTGCTGTTTAATAAAGTTGCCATGCGCCCGGGC 870
|||||||.|||||.||.|||||.|||||||||||.||||||.|.||.||.
BPUM_1325___m 821 AAAAACTGGGAGCTGAAGTGCTATTTAATAAAGTGGCCATGAGACCCGGA 870
BSNT_02385___ 871 AGCGTGACAACGGTGGC-GC-ATGCAAACGATATG-----CTGCTGTTTG 913
||.|||||.|||||.|| || ||||.|| ||| ||||||||||
BPUM_1325___m 871 AGTGTGACGACGGTTGCTGCAATGCCAA----ATGGTCAACTGCTGTTTG 916
BSNT_02385___ 914 GCCTTTCAGGTAATCCGTCGGCATGCTATGTCGGTTTTGAACTGTTTGTC 963
||||.|||||.|||||..|.||.||.|.|||.||.||||||.|.|||||.
BPUM_1325___m 917 GCCTGTCAGGAAATCCAGCTGCCTGTTTTGTTGGCTTTGAATTATTTGTG 966
BSNT_02385___ 964 AAACCGATAATCCAGACATGG-CTGCTCAATGAAACA-CCGCATTC---- 1007
||||||||.|||.|.|.|||| || |..|.|||||| ||| |||
BPUM_1325___m 967 AAACCGATGATCTATAAATGGTCT--TTGAAGAAACAGCCG--TTCCCTG 1012
BSNT_02385___ 1008 AATTTG-TGCG--GAAGCTGTTTTGACCAAGGATTTTCC-GAAGCCGAAC 1053
|.|||| ||.| ||||| ||||..|.|||||||| .||||| |||
BPUM_1325___m 1013 ATTTTGCTGAGGCGAAGC-----TGACACACGATTTTCCAAAAGCC-AAC 1056
BSNT_02385___ 1054 CCATTTACCCGATTTGTTCGTGCGCTCGTGCAC--CA--TCAGGAAGGGA 1099
||.||.||.||||||||..|.|| .|||| || |||.| ||.|
BPUM_1325___m 1057 CCGTTCACTCGATTTGTCAGAGC-----AGCACTTCAATTCACG--GGCA 1099
BSNT_02385___ 1100 ---AGCT--GTTGGCGACACCC-----GTTGGCTTAGATAAGTCGAGCTC 1139
|||| || |.||| ||| || ||| |||||.||.||..|
BPUM_1325___m 1100 GTCAGCTCAGT--GTGAC-CCCAACAGGT---CTT-GATAAATCAAGTGC 1142
BSNT_02385___ 1140 TGTCACATCACTTGCAGATGCCAA-TGCATTTATTATCCTGCCGGGCGGC 1188
.|||||.|||.|||||||.||.|| ||| ||.||..|.|||||.||.||.
BPUM_1325___m 1143 CGTCACCTCAATTGCAGAGGCTAACTGC-TTCATCGTGCTGCCAGGTGGA 1191
BSNT_02385___ 1189 ACGCGAGGCTACGAATCTGGCAGAAC-GGTTCAAGTACTGC----TCATC 1233
||..||||.|...|..|.|| .||.| |||.||.||.|||| |||.|
BPUM_1325___m 1192 ACAAGAGGTTTTAAGGCCGG-TGATCAGGTGCATGTTCTGCTGTTTCAGC 1240
BSNT_02385___ 1234 AGAGAAGAGAATGGAAGTGAATGGCCTTGGTCCGTCCTTTCCCGATCGTC 1283
| .|||| ||||..| |||||.||
BPUM_1325___m 1241 A-CGAAG---------GTGAGGG---------------TTCCCTAT---- 1261
BSNT_02385___ 1284 CAAGTTGTAG---------- 1293
|.||.|.
BPUM_1325___m 1262 ---GCTGGATGACACATTAA 1278
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