Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02368 and BPUM_1317
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:51
# Commandline: needle
# -asequence dna-align/BSNT_02368___ykuS.1.24716.seq
# -bsequence dna-align/BPUM_1317___ykuS.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02368___ykuS-BPUM_1317___ykuS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02368___ykuS-BPUM_1317___ykuS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02368___ykuS
# 2: BPUM_1317___ykuS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 262
# Identity: 182/262 (69.5%)
# Similarity: 182/262 (69.5%)
# Gaps: 35/262 (13.4%)
# Score: 570.0
#
#
#=======================================
BSNT_02368___ 1 ATGGCTAAAAAAATAGGAATTGAACAATCATTATCAGATGTAGAAG--CT 48
||| |.||.|||.||..|.||||.|||.|||||.|||||||||| ||
BPUM_1317___y 1 ATG---ACAAGAATTGGTGTAGAACCATCTTTATCTGATGTAGAAGAACT 47
BSNT_02368___ 49 GCTTTAAAAG-AAAAAGGATATGACGTTGTA-------ATGATGAAAAGC 90
.|| .||| |||||||||||||||||||| |..|||||
BPUM_1317___y 48 ACT---GAAGCAAAAAGGATATGACGTTGTACGTATTCAAAATGAA---- 90
BSNT_02368___ 91 CCTGCTGAT-GCTCAAGGCTGTGACTGCTGTGTCGTAACAGGTCTTGATA 139
|.||..|| |.||| .||||||||||.||||||.|||||.||.|||.
BPUM_1317___y 91 -CAGCAAATGGATCA---GTGTGACTGCTATGTCGTCACAGGACTAGATT 136
BSNT_02368___ 140 ATAATGTGCAAGGGATAGCCGATACGGTAAC-ACAA--GCACCTGTCATT 186
..|||||.|..||.||..|.||.|| ||| |||| |||.||||.|||
BPUM_1317___y 137 CAAATGTTCTTGGCATTTCAGACAC---AACGACAAAGGCATCTGTGATT 183
BSNT_02368___ 187 ACAGCTTCCGGGATGACGGCTGAAGAAATTTG-CAGCGAAGTTGAA-AGC 234
||.||.||.||.|||||||||||.|||||||| || .|||||.||| |||
BPUM_1317___y 184 ACCGCATCTGGTATGACGGCTGATGAAATTTGTCA-AGAAGTAGAACAGC 232
BSNT_02368___ 235 AGAATTCAGTAA 246
|..||||.|||
BPUM_1317___y 233 -GTGTTCAATAA 243
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