Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02368 and BPUM_1317

See Amino acid alignment / Visit BSNT_02368 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:51
# Commandline: needle
#    -asequence dna-align/BSNT_02368___ykuS.1.24716.seq
#    -bsequence dna-align/BPUM_1317___ykuS.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02368___ykuS-BPUM_1317___ykuS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02368___ykuS-BPUM_1317___ykuS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02368___ykuS
# 2: BPUM_1317___ykuS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 262
# Identity:     182/262 (69.5%)
# Similarity:   182/262 (69.5%)
# Gaps:          35/262 (13.4%)
# Score: 570.0
# 
#
#=======================================

BSNT_02368___      1 ATGGCTAAAAAAATAGGAATTGAACAATCATTATCAGATGTAGAAG--CT     48
                     |||   |.||.|||.||..|.||||.|||.|||||.||||||||||  ||
BPUM_1317___y      1 ATG---ACAAGAATTGGTGTAGAACCATCTTTATCTGATGTAGAAGAACT     47

BSNT_02368___     49 GCTTTAAAAG-AAAAAGGATATGACGTTGTA-------ATGATGAAAAGC     90
                     .||   .||| ||||||||||||||||||||       |..|||||    
BPUM_1317___y     48 ACT---GAAGCAAAAAGGATATGACGTTGTACGTATTCAAAATGAA----     90

BSNT_02368___     91 CCTGCTGAT-GCTCAAGGCTGTGACTGCTGTGTCGTAACAGGTCTTGATA    139
                      |.||..|| |.|||   .||||||||||.||||||.|||||.||.|||.
BPUM_1317___y     91 -CAGCAAATGGATCA---GTGTGACTGCTATGTCGTCACAGGACTAGATT    136

BSNT_02368___    140 ATAATGTGCAAGGGATAGCCGATACGGTAAC-ACAA--GCACCTGTCATT    186
                     ..|||||.|..||.||..|.||.||   ||| ||||  |||.||||.|||
BPUM_1317___y    137 CAAATGTTCTTGGCATTTCAGACAC---AACGACAAAGGCATCTGTGATT    183

BSNT_02368___    187 ACAGCTTCCGGGATGACGGCTGAAGAAATTTG-CAGCGAAGTTGAA-AGC    234
                     ||.||.||.||.|||||||||||.|||||||| || .|||||.||| |||
BPUM_1317___y    184 ACCGCATCTGGTATGACGGCTGATGAAATTTGTCA-AGAAGTAGAACAGC    232

BSNT_02368___    235 AGAATTCAGTAA    246
                      |..||||.|||
BPUM_1317___y    233 -GTGTTCAATAA    243


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