Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02364 and BPUM_1314
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:50
# Commandline: needle
# -asequence dna-align/BSNT_02364.1.24716.seq
# -bsequence dna-align/BPUM_1314.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02364-BPUM_1314.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02364-BPUM_1314.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02364
# 2: BPUM_1314
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 486
# Identity: 326/486 (67.1%)
# Similarity: 326/486 (67.1%)
# Gaps: 57/486 (11.7%)
# Score: 1062.5
#
#
#=======================================
BSNT_02364 1 TTG---GCTAAGATTTTGCTTGTTTATGCAACAATGTCAGGCAACACTGA 47
.|| |..|||.||||.||.||.|||||.||||||||.||.||.||.||
BPUM_1314 1 GTGACAGAAAAGGTTTTACTAGTGTATGCCACAATGTCTGGGAATACAGA 50
BSNT_02364 48 AGCAATGGCAGATTTAATTGAAAAGGGGCTTCAGGAGGCGGAAGCA---- 93
|||.|||||||||.|||||||||| .||..||| |.||||||
BPUM_1314 51 AGCGATGGCAGATCTAATTGAAAA-AGGAATCA-----CAGAAGCAGGGG 94
BSNT_02364 94 --GAAGTAGACCGTTTCGAAGCAATGGATATTGATGATGCCCAGCTGTTT 141
|..||.||||||...|||||.|||||||| ||||||..||||..|.
BPUM_1314 95 CTGGCGTGGACCGTCATGAAGCGATGGATAT---TGATGCAGAGCTTCTC 141
BSNT_02364 142 ACCGATTATGACCATG-TCATAATG---GGAACCTACACGTGGGGAGACG 187
|..||||| ||.| .|||.||| |||.|.|||||.|||||.||.|
BPUM_1314 142 AATGATTA----CACGCACATTATGTTAGGAGCATACACATGGGGGGATG 187
BSNT_02364 188 GAGATCTGCCTGATGAATTTTTAGATCTTGTTGAAGACATGGAGGAGATT 237
|.||.||.||||||||.|||.|.|||.||..||||||.|||||.|||.||
BPUM_1314 188 GTGACCTTCCTGATGATTTTATTGATTTTTATGAAGAAATGGAAGAGCTT 237
BSNT_02364 238 GATTTTTCCGGTAAAACATGCGCTGTATTCGGTTCTGGTGATACAGCATA 287
|||||..|.||.|||.|||..||||||||||||||.||.||.|||.|.||
BPUM_1314 238 GATTTAACGGGAAAAGCATTTGCTGTATTCGGTTCCGGGGACACATCTTA 287
BSNT_02364 288 TGA--ATTTTTCTGCGGAGCGGTTGATACGCTCGAATCAAAAATAAAAGA 335
||| ||||| ||||||||.||||||....|||||..||||.|.||.||
BPUM_1314 288 TGAGCATTTT--TGCGGAGCTGTTGATCTAATCGAAGAAAAAGTGAAGGA 335
BSNT_02364 336 ATGCGGTGGCGACATTGTGCTGCCTTCGGTAAAAATCGAAAATAATCCAG 385
|...||.||.||||||||.|||||.||.||.||.|||||....|||||||
BPUM_1314 336 ACTTGGCGGTGACATTGTCCTGCCATCCGTCAAGATCGAGCTAAATCCAG 385
BSNT_02364 386 AAGGTGACGAAGAGGAAGAATTAATAAACTTTGGGAGACAATT------- 428
||||.||.|||||.||..||||.||....|||||.|.||||||
BPUM_1314 386 AAGGAGAAGAAGAAGAGAAATTGATTTCTTTTGGCAAACAATTTGTTCAT 435
BSNT_02364 429 -CGCA-AAGAA--AAGCGG----ATGCGCTGTCTGA 456
.||| .||.| |||||| |
BPUM_1314 436 CTGCACCAGCAGGAAGCGGGGTAA------------ 459
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