Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02362 and BPUM_1312

See Amino acid alignment / Visit BSNT_02362 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:50
# Commandline: needle
#    -asequence dna-align/BSNT_02362___ykuN.1.24716.seq
#    -bsequence dna-align/BPUM_1312.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02362___ykuN-BPUM_1312.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02362___ykuN-BPUM_1312.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02362___ykuN
# 2: BPUM_1312
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 504
# Identity:     329/504 (65.3%)
# Similarity:   329/504 (65.3%)
# Gaps:          54/504 (10.7%)
# Score: 972.5
# 
#
#=======================================

BSNT_02362___      1 ATGGCTAAAGCCTTGATTACATATGCCAGCATGTCAGGAAATACAGAAGA     50
                     |||   |||||..|.|||.|||.|||.||.|||||.||.|||||||||||
BPUM_1312          1 ATG---AAAGCACTAATTGCATTTGCGAGTATGTCTGGTAATACAGAAGA     47

BSNT_02362___     51 CATTGCCTTCATAATAAAAGATACGCT-TCAGGAATATGAGTTGGATATC     99
                     .||.||....||.||||||.|.||.|| ..||||| |.|.|.|.||||..
BPUM_1312         48 TATGGCAGCGATCATAAAACAAACACTAGAAGGAA-AAGGGATCGATACA     96

BSNT_02362___    100 GA-TTGTGTCGAGATAGATGATATGGATGCG-----------TCTTGTTT    137
                     || .||| |.||..|.|||||||  .|.|||           |||     
BPUM_1312         97 GAGATGT-TGGAATTTGATGATA--CAAGCGCAGAGGACCTTTCT-----    138

BSNT_02362___    138 AACCTCCTATGATTATGTACTGATTGGCACCTATACATGGGGGGACGGCG    187
                         ||.||.||||||||..|.||.||..|.|||||||||||.||.||.|
BPUM_1312        139 ----TCATACGATTATGTGTTCATCGGTTCTTATACATGGGGTGATGGTG    184

BSNT_02362___    188 ATTTGCCCTACGAAGCGGAGGATTTTTTCGAAGAGGT-----CAAACAGA    232
                     ||||.||.||.|||||.||||||||||..||||||||     |     |.
BPUM_1312        185 ATTTACCTTATGAAGCAGAGGATTTTTATGAAGAGGTTTCTGC-----GC    229

BSNT_02362___    233 TTCAGCTTAATGGTTTAAAAACAGCCTG-CTTCGGGTCTGGCGATTATTC    281
                     ||.|.||.|.||...|.|||.||| ||| .|||||.||.||.|||||...
BPUM_1312        230 TTGAACTAAGTGACATCAAAGCAG-CTGTGTTCGGATCCGGAGATTACAG    278

BSNT_02362___    282 TTATCCAAAGTTTTGCGAAGCGGTGAATTTGTTCAATGTCATGCT----G    327
                     .|||||.||||||||.||.||.||..||...||..|||.||||||    .
BPUM_1312        279 CTATCCGAAGTTTTGTGAGGCTGTCCATACATTTCATGACATGCTCAAAT    328

BSNT_02362___    328 CAAGAGGCGGGAGCTGCTGTTTACCAGGAAACACTAAAAATTGAATTAGC    377
                     |||    |.||.||..||||.|.||..||||||.|.|||||.||..|.||
BPUM_1312        329 CAA----CTGGTGCATCTGTATTCCCTGAAACATTGAAAATGGAGCTTGC    374

BSNT_02362___    378 GCCTGAAACAGATGAAGATGTGGAAAGCTGCCGAGCGTTTGCGAGAGGTT    427
                     ||||||.||||||||||||||||...||||.|..|..|||||||.|.|.|
BPUM_1312        375 GCCTGATACAGATGAAGATGTGGCGTGCTGTCAGGAATTTGCGACAAGCT    424

BSNT_02362___    428 TTCTTGCATGGGCAG-ATTATATG---AACAAGGAAAAAATCCATGTTTC    473
                     ||.|..|.|||||.| ..|||.||   |||.||...||||| ||||||||
BPUM_1312        425 TTTTAACGTGGGCGGCGCTATCTGAGAAACGAGTTGAAAAT-CATGTTTC    473

BSNT_02362___    474 ATAA    477
                     ||||
BPUM_1312        474 ATAA    477


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