Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05986 and BPUM_1295
See
Amino acid alignment /
Visit
BSNT_05986 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:31
# Commandline: needle
# -asequence dna-align/BSNT_05986___yxiO.1.24716.seq
# -bsequence dna-align/BPUM_1295___yxiO.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05986___yxiO-BPUM_1295___yxiO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05986___yxiO-BPUM_1295___yxiO.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05986___yxiO
# 2: BPUM_1295___yxiO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1670
# Identity: 731/1670 (43.8%)
# Similarity: 731/1670 (43.8%)
# Gaps: 742/1670 (44.4%)
# Score: 1229.5
#
#
#=======================================
BSNT_05986___ 1 ATGATGAAACGTTTTAC---GAAACA--------AGAAAACAG------- 32
.||||| || ||||.| ||||||.||
BPUM_1295___y 1 ---TTGAAA------ACAGGGAAAAAGACCAAGCAGAAAAAAGGGGCAGG 41
BSNT_05986___ 33 ---------------------------------CTGGGTATTATATGACT 49
|||||.|||.|||||||
BPUM_1295___y 42 CTTCGGGCTGTTTTTGACAGCACCCATTTTGGCCTGGGCATTGTATGACT 91
BSNT_05986___ 50 GGGCAAATTC--TGCTTACTCAATTGTCG----TGACCACCGCGGTATTT 93
..||.|||.| |..|| ||| ||| |||.|||| ||||
BPUM_1295___y 92 TTGCTAATACGATATTT--TCA----TCGAATATGATCACC-----ATTT 130
BSNT_05986___ 94 -----CCGT--TATTTTATAAATCAGCAGCTGCGGAA---AGCGGTGTCA 133
|||| ||.|| ||| .||| |.|||.|.||
BPUM_1295___y 131 TCTTCCCGTTCTACTT---------GCA-----AGAAACGATCGGAGACA 166
BSNT_05986___ 134 GCGC------CGCTCAATCGACTGCCTATCTGGGCTA-TACCATTGCGAT 176
|.|| .|.|||| || .|||| |||..|| ||
BPUM_1295___y 167 GTGCGAGAATGGATCAA----------AT---TGCTAGTACATTT---AT 200
BSNT_05986___ 177 TTC-------AACG-----------TTTATTCTTGCGATGCTCGGTCCTA 208
||| |||| |||.||||.|..||..||...|| |
BPUM_1295___y 201 TTCTTATGCAAACGCACTAGCCAGTTTTTTTCTCGTCATTTTCACACC-A 249
BSNT_05986___ 209 TTTTAGGCA--------CAATCGCCGACTATGAAGGGTGCAAGAAA-AAG 249
||.||.|.| |.|||| ||| ||| ||.||| |||
BPUM_1295___y 250 TTATACGGAGTTCTGATCGATCG--GAC-----AGG----AAAAAAGAAG 288
BSNT_05986___ 250 TTCT---TCGGTTTCTTT-GTGTCAGCCGGTGTCGCCAGCAC-------- 287
..|| ||...||.||| .|.||| ...||.|.||..|.||
BPUM_1295___y 289 CGCTATATCACATTGTTTACTCTCA-TATGTATAGCTTGTACGTTTTTAA 337
BSNT_05986___ 288 -CGCGA----TGCTCGCCTT--TATCCCAAGTGA--GCATTGGCTGCTAT 328
.|.|| ||||.|..|| |.||.||||.|| |..|||| ||
BPUM_1295___y 338 TGGGGATCTTTGCTGGAATTGATTTCTCAAGCGAATGGTTTGG-----AT 382
BSNT_05986___ 329 TGCTACTGT---TTTAT-----------AC---------GAT-------A 348
||| |||| ||||| || ||| .
BPUM_1295___y 383 TGC--CTGTCTCTTTATTAGTCGTGGTCACCTTGTTTGTGATTGCAAAAT 430
BSNT_05986___ 349 TCGGCTATC------GGTTTTTCCGGCGCCAATGTGTTTTATGATGCCTT 392
||..||||| |.|| .|||||||||||..||.|
BPUM_1295___y 431 TCTTCTATCACTCGAGCTT-------------AGTGTTTTATGACACCAT 467
BSNT_05986___ 393 TCTCGTGGACGTCACGCC------TGAGA-AACGGATGAA-----TCTCG 430
.|| ||| ||.|| ||.||||||| .||..
BPUM_1295___y 468 CCT------------GCCCGATCTTGGGACAAAGGATGAAATACCGCTTA 505
BSNT_05986___ 431 TCTCGGCACGGGGTTTTGGC---------------TTAGGATACA----- 460
|||| .||.|||||| ||||| .|||
BPUM_1295___y 506 TCTC------TGGATTTGGCATTGCCGTTGGTTATTTAGG-GACACTCGT 548
BSNT_05986___ 461 -----------------------TTGGCAGCACGA-----TTC------C 476
|||||| |.|| ||| |
BPUM_1295___y 549 CGGCCTCACAGTTTATTTACTTGTTGGCA--ATGACCAATTTCATGAAGC 596
BSNT_05986___ 477 ATTTAT-----CATCAGTAT--TGCTGTC-----ATCCTGC--------- 505
|||||| ||.||.||| |.||.|| .||||||
BPUM_1295___y 597 ATTTATTCCGACAGCACTATTATTCTTTCTTTTTTTCCTGCCATTTCTCT 646
BSNT_05986___ 506 ---TCGCACAAGCAGAGACGAT--TCCAGTGTCTGTATCGGCCGCAAGCC 550
|.|.| |.||||..| ||||.|| |..|.|||||..
BPUM_1295___y 647 TTTTTGTA-----AAAGACCCTCATCCACTG-------CCACAGCAAGAG 684
BSNT_05986___ 551 A-----GCTGTCCTTTTTCATAACGGCTGCCTGGTGGGGGCTGTTCACTA 595
| || ||||||||||| |||||
BPUM_1295___y 685 AAAAAGGC-GTCCTTTTTCA-------------GTGGG------------ 708
BSNT_05986___ 596 TCCCAATGATTAAACATGTCCATCAACGCTATTACATCAAAAGAGAACCT 645
||| |||||.|
BPUM_1295___y 709 -----------------------------TAT-------AAAGAAA---- 718
BSNT_05986___ 646 CATATT-GTCATCAACAGCTTTAAGCGGCTCGGCCAGACGATGAAACGGA 694
.|||| | ||..||||| ||| ||||||
BPUM_1295___y 719 -TTATTCG-------CACGTTTAA-----------AGA-GATGAA----- 743
BSNT_05986___ 695 TCAGGCAATA----CCGGGCACTTTTCCTCTTTTTGCTCGCTTATTTCTT 740
|||.|| |||| ||||| .|||||.||.|||| .|||||
BPUM_1295___y 744 ----GCATTACAAGCCGG---CTTTT-ATCTTTATGATCGC---ATTCTT 782
BSNT_05986___ 741 TTATATCGACGGA------GTCGGCA-CGATT---ATTACG-------AT 773
||.||| ||..|| |..|.|| ||||| ||.|.| ||
BPUM_1295___y 783 TTTTAT-GAATGATGCCTTGCAGACAGCGATTGCGATGATGGCTGTGTAT 831
BSNT_05986___ 774 GTCGACATCCTATGGATCA---GATTTAGGGATCGGTTCCTCA----AGC 816
|.|.|.||| |||| |.||||..|.|.|| || |.|
BPUM_1295___y 832 GCCAAAATC------ATCATTGGCTTTACCGCTGGG-----CAATTTATC 870
BSNT_05986___ 817 CTCCTGATCATCCTATTTGTCACCCAGGTGGTCGCTGCACCGTTT----- 861
||.|| |.||| |||| |||| |||.|||
BPUM_1295___y 871 CTGCT--TTATC----TTGT----------GTCG----ACCATTTCAAGT 900
BSNT_05986___ 862 -TCGATTG---------TATACGGAAAACTGGCAGAA-CGCTTCACGGGG 900
|| |||| |||..|||.|..|.|||.|| ||.|| ||||
BPUM_1295___y 901 ATC-ATTGGTTCCTTTCTATTTGGATATATCGCAAAAGCGATT---GGGG 946
BSNT_05986___ 901 AAGACCATGCT---GTAC-GTCG-GGATCGTCATTTATATGATCGTCTGC 945
.|.|.| ||| .||| ||.| |.|| ||.|||| ||||||| |||
BPUM_1295___y 947 CAAAGC--GCTCGATTACAGTTGTGTAT-GTGATTT---TGATCGT-TGC 989
BSNT_05986___ 946 GTGTATGCCTATT----TTATGA-AG--ACAACG--ATTGAT-TTCTGGA 985
|.|| ||| .|.||| || |||||| ||.|.| ||||||.
BPUM_1295___y 990 ---TCTG---ATTCTGGCTGTGACAGCCACAACGGAATGGGTCTTCTGGG 1033
BSNT_05986___ 986 T-ACTGGC----TAT----------GCTTGTCGCCACCTCGCAGGGCGGT 1020
| .|.||| ||| .||.|.|||.| ||.|||.||.
BPUM_1295___y 1034 TGGCCGGCAGTTTATTCGGAATTTCACTCGGCGCAA----GCTGGGGGGC 1079
BSNT_05986___ 1021 ATTCAAGCCCTAAGCCGTTCCTATT-----TCGCCAAGCTTGTGCCAAAG 1065
|| |.|.|| |||| ||| ||||....||||||
BPUM_1295___y 1080 AT-----CACGAA--------TATTGATTATCG---AGCTGACACCAAAG 1113
BSNT_05986___ 1066 CGCCACGCCAATGAA------------TTCTTTGG---CTTCTACAACAT 1100
||| ||.||||| ||| |.||
BPUM_1295___y 1114 ------------GAAAAAAGAGGACAGTTTTTTGGTCTCTT-TGCA---- 1146
BSNT_05986___ 1101 TTTT---GGAA------------AATTCGCC---TCAATTATGGGGCCGC 1132
||.| |||| .|||.||| |||.|||||||.|.|.
BPUM_1295___y 1147 TTCTCAGGGAAGGTGTCGTCCATTATTGGCCCTATCATTTATGGGTCAGT 1196
BSNT_05986___ 1133 TACTCATTGCCGTTACCGCCCAGCTGACCGGGAAATCCTCG--------- 1173
.|||| |||.||| .||..||| || |||||| ||||
BPUM_1295___y 1197 CACTC--TGCTGTT--TGCAGAGC--AC--GGAAAT-CTCGCAAGTCGTC 1237
BSNT_05986___ 1174 ----ACTGCGGTGTTCAGCCTGATCATT-TTGTTTGTGATTGGTATTGTG 1218
|||..|.|.|| |..||||| ||| ..|.|||.||..|.|||
BPUM_1295___y 1238 TTGCACTAGGCTCTT-----TACTCATTCTTG-CAGCGATAGGACTCGTG 1281
BSNT_05986___ 1219 ATTCTTGCCTTTGTTCCCGAG-GAAACCAGCACAGATGTCAGCCAGCAGC 1267
||||.|...||.|| .|||| ||||.| ||.|
BPUM_1295___y 1282 ATTCATCAATTCGT--ACGAGAGAAAGC---------GTAA--------- 1311
BSNT_05986___ 1268 AAAATGACCTGCCCCTTTAA 1287
BPUM_1295___y 1311 -------------------- 1311
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.