Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02335 and BPUM_1284
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:48
# Commandline: needle
# -asequence dna-align/BSNT_02335___mcpC.1.24716.seq
# -bsequence dna-align/BPUM_1284___mcpC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02335___mcpC-BPUM_1284___mcpC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02335___mcpC-BPUM_1284___mcpC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02335___mcpC
# 2: BPUM_1284___mcpC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2158
# Identity: 1295/2158 (60.0%)
# Similarity: 1295/2158 (60.0%)
# Gaps: 386/2158 (17.9%)
# Score: 3376.5
#
#
#=======================================
BSNT_02335___ 1 TTGTTTAAAAAACTTCACATGAAGATTGCTGTTTTTGTTTCGATTATGTT 50
.|||||||.||||||||..|||..||.||||||||..|.||..||||.||
BPUM_1284___m 1 ATGTTTAAGAAACTTCAAGTGAGAATAGCTGTTTTCATCTCAGTTATTTT 50
BSNT_02335___ 51 AATCGTCACAGTTGT-TCTTTTAATGCTGTCTTCTTATTTGACGCTAAAA 99
|||..|.||.||||| .|..||.|.| ||..|||..|||||....|||.|
BPUM_1284___m 51 AATTTTAACTGTTGTGGCAGTTCAAG-TGGGTTCCAATTTGGTATTAACA 99
BSNT_02335___ 100 CCGATGATT--ACAGAGGATGGGAAAAATACAACTCAA----AACGTGAC 143
||..||||| || || ||||..||||..|| |.|.| ||||
BPUM_1284___m 100 CCACTGATTGAAC-GA-GATGCAAAAACGAC--CGCCACAGCAACG---- 141
BSNT_02335___ 144 GCAGTCA-CTTGAACAAAATATTGAATTGCA-ATTAAAGAGTTAT----- 186
||||..| |.||| ||.|.||| |||.|| | ||||..|.||
BPUM_1284___m 142 GCAGAAAGCCTGA--AAGACATT--ATTACAGA--AAAGCTTGATAATTA 185
BSNT_02335___ 187 --GCCATTTCGTTATCAAGATTGGCTAATGGGGAATTAAC-GCATACATT 233
||.||..|.|||.||| ||||||.|..||..||.|||| |.|.| |||
BPUM_1284___m 186 CGGCAATACCATTAACAA-ATTGGCAACAGGTAAAATAACTGAAGA-ATT 233
BSNT_02335___ 234 TG-----TAACGAAACCAAGTAAAGAAGTTGCTCGGCTG-TTTCACGATG 277
|| .||| ||||.|||.|||.| || || ||| ||
BPUM_1284___m 234 TGCGCAAAAAC-AAACAAAGCAAACA-----CT----TGATTT-----TG 268
BSNT_02335___ 278 ACATTAA---GCAAATCAAA---------------GATAACGA-TGATT- 307
|.| || || |||.||| ||||| | |.|||
BPUM_1284___m 269 AAA--AAAGTGC-AATAAAAAACCTGCAGGAACAGGATAA--ACTCATTT 313
BSNT_02335___ 308 -ATGTTGCGATGGCTTACATAGGCAC-------CGCAAAAAAAGAAATGT 349
|| |.|||||.||.||.|| .||| |||||.
BPUM_1284___m 314 CAT-------TTGCTTATATTGGAACAACTGATGGCA-------AAATGC 349
BSNT_02335___ 350 T----TACATATCCAAAAGCGGATTTC-------GCTGAGGATTATGATC 388
| | ||| ||||.||| ||..|||| |||||||
BPUM_1284___m 350 TCGGCT-----TCC-----CGGAGTTCGATCTTGGCCAAGGA-TATGATC 388
BSNT_02335___ 389 CAGC--ATCAAGACCATGGTATAAGCTTGCAGCTGAAACCCCGGATCAAG 436
||.| |.||||.| ||||.|||.|..||||..||||..||.|||||||
BPUM_1284___m 389 CATCTAAACAAGGC--TGGTTTAAACAAGCAGTCGAAAAGCCTGATCAAG 436
BSNT_02335___ 437 TTGTTTGGACGGAACCTTATAAAGATGTCGTGACAGGAGACA--TGATTG 484
||||||||||.||.||.||||..||||..|..|| ||.|.| ||||||
BPUM_1284___m 437 TTGTTTGGACAGATCCATATATTGATGAAGCAAC--GAAAAAAGTGATTG 484
BSNT_02335___ 485 TTACTGCATCGAAAGCGATCTTAGACGGGCAAAAA-------GTGATAGG 527
|..|.||..||||.||||| .|.|||||| ||.||.||
BPUM_1284___m 485 TCTCAGCCACGAAGGCGAT-------TGTCAAAAATGGAAAGGTCATTGG 527
BSNT_02335___ 528 GGTTGCCAG-CTATGACTTGAAACTCTCTGCTATCCAGA--GTATGGTCA 574
.||.||..| || |||.|||||.|||||..|.||.|| | .||| .|.|
BPUM_1284___m 528 AGTCGCTGGACT-TGATTTGAAGCTCTCCTCCATTCA-ATCTTAT-ATAA 574
BSNT_02335___ 575 ATAAACAAAAGGTGCCTTACAATGGATTTGCCTTTTTAGCTGATACGAGC 624
||.|||||.||.|.|||||.||.||....||.||.||||.|||||..|..
BPUM_1284___m 575 ATGAACAAGAGATCCCTTATAAAGGGACCGCTTTCTTAGTTGATAACACA 624
BSNT_02335___ 625 GGCAATCTTTTAGCCCATCCGTCAAATCAAGGAAAAAATATATCAAAGGA 674
||||...||||.||.|||||..|..|.|||||||||||.||.|||||||
BPUM_1284___m 625 GGCACCATTTTGGCGCATCCAACGCAGCAAGGAAAAAACATTTCAAAGG- 673
BSNT_02335___ 675 TCAAACACTGCAAACCATCGCATCCGAGAAAAAAGGGAT--ACAA----- 717
||||.||.|..|||||||.|.| ||||
BPUM_1284___m 674 -----------------TCGCCTCTGTAAAAAAAGCGCTTGACAACTCAG 706
BSNT_02335___ 718 -----GATG-------TGAATGGA-----------AAAATGGTTGTGTAC 744
|||| .|||..|| |||||
BPUM_1284___m 707 GTATTGATGACAGCAAAGAACTGACGGTCATATCTAAAAT---------- 746
BSNT_02335___ 745 CAAA-----CGATTGGCGAAACGGGCTGGAAGGTCG-GAACGCAATTTGA 788
|||| ||||||| || ||.||| || ||.| |||||
BPUM_1284___m 747 CAAAGAAGCCGATTGG----AC-GGTTGG-----CGTGAGC----TTTGA 782
BSNT_02335___ 789 TACCGATCAATTAA----TGTGGATTTCAGATAAAATGAATCGGGCAA-- 832
||..||..|| |.|||||..||||..|||||||||.|.|||
BPUM_1284___m 783 ----GAAAAAGAAACTGCTTTGGATCACAGAACAAATGAATCAGACAAGT 828
BSNT_02335___ 833 ATCTTTGGATATCATTGCTTGCGCTTATCATAACAATTATTCTCAGCTAC 882
|||.|| |||||..|..||||..||||..|..|.||.||.||.||||.|
BPUM_1284___m 829 ATCATT--ATATCCGTCATTGCCATTATTCTTGCGATGATCCTTAGCTTC 876
BSNT_02335___ 883 TTCCTGGCCAAAACGATAACCGGTCCGATACAGCAGCTGATC---GCAAA 929
||..||||.|.||..||.||....||.||..|||..|| |.| |||..
BPUM_1284___m 877 TTATTGGCAAGAAGCATTACAACACCAATCAAGCGTCT-AACAGGGCATG 925
BSNT_02335___ 930 AACGAAAGCTGTTTCCGCAGGCGATTTAAC-AGTGCGCGCGGAATCAAAA 978
..||.||| ||.||.|.|||||||||||| |||.||| ..|||...||.
BPUM_1284___m 926 TGCGTAAG--GTGTCAGAAGGCGATTTAACAAGTACGC-TTGAAGTGAAG 972
BSNT_02335___ 979 TCTAAGGATGAAGTCGGTATTTTAAC-AAGAGATTTCAATCTGATGGTTG 1027
||.||.||||||.|.|||.|..|.|| ||.||.||| ||||..|||.|.|
BPUM_1284___m 973 TCCAAAGATGAAATTGGTCTCCTCACGAAAAGCTTT-AATCAAATGATAG 1021
BSNT_02335___ 1028 AAAATATGAAGGAAATGGTTGAGCAAGTGAGACTCTCTTCAGGGAAAGTA 1077
|..|.||.|.|||..|..||||..||||||.|....||||||...||||
BPUM_1284___m 1022 AGGACATCAGGGAGTTAATTGAAAAAGTGAAAGGGGCTTCAGATCAAGT- 1070
BSNT_02335___ 1078 TCTGACACCTCTGAACAACTAACGGCTGTCTCTG-CCGAAA---CTAATG 1123
|.||||| |.||||..|.|.| || ||.||| |.||||
BPUM_1284___m 1071 TGTGACA----TCAACAGATGAAG--------TGACCCAAATTTCAAATG 1108
BSNT_02335___ 1124 AAA---------CAAGCGGACAAATTGCAAAAGCGATTGAAGAAGTAGCC 1164
||| |.||.|..||.||.||||..||.|||.||||.||.||.
BPUM_1284___m 1109 AAACCTTGCTGTCGAGTGAGCAGATCGCAACGGCCATTCAAGAGGTGGCA 1158
BSNT_02335___ 1165 GCAGGAGCATCGGAACAGGCTTCTGAAGTTGAAACCATTAATGAAAAATC 1214
.||||.||.||..|||||||.||.||.|..|||||.||||||||.|||||
BPUM_1284___m 1159 ACAGGGGCGTCTAAACAGGCATCAGATGCAGAAACGATTAATGAGAAATC 1208
BSNT_02335___ 1215 GGAAAGC--CTGTCAACGAAAATCAGGCAAATCGCTGAG----------- 1251
|.||| .|||....||||.|..|.||.||.|.||||
BPUM_1284___m 1209 --AGAGCATTTGTATGAGAAAGTGCGCCATATGGGTGAGCTTGCCTCACA 1256
BSNT_02335___ 1252 GAGGCAGGCGGAATTAAAGAACGTTCAAAATCGTCCGAGGATGCAAGCTA 1301
.|.||| ||..||| ||||||||.||.||.|||||||||||
BPUM_1284___m 1257 AATGCA---------AACCAAC--TCAAAATCATCTGAAGATGCAAGCTA 1295
BSNT_02335___ 1302 TAAAGG---------ACTTGACGCGCTCGGCCAGCTGCTGATGAAATCAA 1342
|||||| |||||..|.|||||.||| .||||| |
BPUM_1284___m 1296 TAAAGGGCTAGATGCACTTGGTGTGCTCGTCCA---------AAAATC-A 1335
BSNT_02335___ 1343 ACGA-----AGCCAATATGGAAACGAAAAAGGTTGA--AACGATGCTGCT 1385
||.| |||.|| |||.||||||||||.|| || ||||||||
BPUM_1284___m 1336 ACAAAAGCGAGCGAA----GAATCGAAAAAGGTAGAGCAA--ATGCTGCT 1379
BSNT_02335___ 1386 GGATTTGGAAAATCAAACTAAGAATATTGAAGAAGTCGTTACAGCGATTT 1435
.||..|.||..||.||||.||.|||||||||.|.||.||.||||||||||
BPUM_1284___m 1380 AGACCTTGAGCATAAAACGAAAAATATTGAAAACGTGGTGACAGCGATTT 1429
BSNT_02335___ 1436 CAAACATATCTGATCAAACCAACTTGCTTGCCTTAAATGCCAGTATTGAG 1485
|..|.||.||.||||||||.||.||.|||||..|.|||||.||.|||||.
BPUM_1284___m 1430 CTCAAATTTCGGATCAAACGAATTTACTTGCACTGAATGCAAGCATTGAA 1479
BSNT_02335___ 1486 GCAGCCAGAGCCGGAGAAAGCGGGCGCGGTTTTGCCGTCGTAGCCGATGA 1535
|||||.|||||.|||||||||||..|.||.|||||.||.||.||.||.||
BPUM_1284___m 1480 GCAGCGAGAGCTGGAGAAAGCGGAAGAGGCTTTGCTGTTGTTGCAGAAGA 1529
BSNT_02335___ 1536 AGTGCGGAAGTTAGCTGAGCAATCAGCCCTTTCTACAAAGCATATCAGCG 1585
|||..|.|||.|.|||||.|||||.||.|..||.|||||.||.||.||.|
BPUM_1284___m 1530 AGTTAGAAAGCTTGCTGAACAATCTGCGCAATCAACAAAACACATTAGTG 1579
BSNT_02335___ 1586 AGACTGTGAAGCTTATCCAGCTTGAGACAAAAGAGGCCTCTCACGCGATG 1635
|.||.||.||.||.||.||...|||..|.||..||||..||.|.||||||
BPUM_1284___m 1580 AAACCGTCAAACTCATTCAAGATGAATCGAAGAAGGCGGCTGAAGCGATG 1629
BSNT_02335___ 1636 GTTGAGGCAAGCAGAATGAATGATGAACAAAACAGT---GCCATTCACGA 1682
...|..|||||.|..||||||||.|||||| .|| ||||||.|.|.
BPUM_1284___m 1630 ACAGTAGCAAGTAAGATGAATGAGGAACAA---GGTGACGCCATTAATGC 1676
BSNT_02335___ 1683 AACTGGAGAGGTATTAAATACGATAAC--TGCAGAAATGCAGTCACTGGT 1730
|||.||.||||.|.|.|..|..||.|| || |||||||||.||||.||
BPUM_1284___m 1677 AACAGGCGAGGCACTGAGCAGCATCACAATG--GAAATGCAGGCACTTGT 1724
BSNT_02335___ 1731 -----------ACAAGGTATTGA-TCACATTTACGCGGAAATTCAAAG-A 1767
||| |||||.| ||||| || ||||.| |
BPUM_1284___m 1725 CGGATCAATCGACA--GTATTCATTCACA--------GA---TCAATGAA 1761
BSNT_02335___ 1768 ATGAGTGAAGAACAGCTTGCGATTTCTGAAGCTATTCAAAGCATTTCAGC 1817
||||..||||||||.|....|||...|||..|.||||||||.|||.|.||
BPUM_1284___m 1762 ATGACAGAAGAACAACAGAAGATGAGTGACTCCATTCAAAGTATTGCGGC 1811
BSNT_02335___ 1818 CATATCACAGGAATCAGCTGCCGCAGCAGAGGAAGTGAACGCATCAACCG 1867
.||.||..|.|||||.||.||..||||.|||||||||.||||.||.||.|
BPUM_1284___m 1812 AATTTCTGAAGAATCTGCAGCTTCAGCTGAGGAAGTGCACGCGTCTACAG 1861
BSNT_02335___ 1868 ATGAACAGCTTGTCACCCTTGATAAAG-TCAAACAC-TCAACGGAAACAC 1915
|||||||..| |||..|.|.|.|||| .|.||.|| ||.||.||||..|
BPUM_1284___m 1862 ATGAACAAGT--TCAAGCGTTAGAAAGAACGAAAACTTCGACCGAAATGC 1909
BSNT_02335___ 1916 TAAAACATGCAAGCCAAGAACTTATGAAC-----ACAATTGCAAAATTCA 1960
|.||..|..|||||||.|..|| || .|..|||....|||.|
BPUM_1284___m 1910 TGAACGAATCAAGCCAGGCGCT-----ACGTCAGGCGGTTGACCGATTTA 1954
BSNT_02335___ 1961 CATTGTAA 1968
.|.|||||
BPUM_1284___m 1955 AAGTGTAA 1962
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