Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_02330 and BPUM_1280

See Amino acid alignment / Visit BSNT_02330 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:48
# Commandline: needle
#    -asequence dna-align/BSNT_02330___ptsH.1.24716.seq
#    -bsequence dna-align/BPUM_1280___ptsH.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02330___ptsH-BPUM_1280___ptsH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02330___ptsH-BPUM_1280___ptsH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02330___ptsH
# 2: BPUM_1280___ptsH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 271
# Identity:     225/271 (83.0%)
# Similarity:   225/271 (83.0%)
# Gaps:           8/271 ( 3.0%)
# Score: 940.5
# 
#
#=======================================

BSNT_02330___      1 ATGGCACAAAAAACATTTAAAGTAACTGCAGATTCTGGAATCCATGCTCG     50
                     |||||.|||.|||||||.|||||||||||||||||||||||.||.||.||
BPUM_1280___p      1 ATGGCTCAACAAACATTCAAAGTAACTGCAGATTCTGGAATTCACGCACG     50

BSNT_02330___     51 TCCTGCGACAGTTCTTGTTCAAACTGCTAGCAAATACGACGCTGACGTTA    100
                     ||||||.|||||||||||.|||||||||||.|||||.||.|||||..|.|
BPUM_1280___p     51 TCCTGCAACAGTTCTTGTACAAACTGCTAGTAAATATGATGCTGATATCA    100

BSNT_02330___    101 ATTTAGAATATAACGGCAAAACAGTTAACCTTAAATCTATTATGGGTGTT    150
                     |.|||||||||||.||.||||||||.|||||.|||||||||||||||||.
BPUM_1280___p    101 ACTTAGAATATAATGGTAAAACAGTGAACCTGAAATCTATTATGGGTGTA    150

BSNT_02330___    151 ATGTCTTTAGGTATCGCTAAAGGCGCTGAGATCACAATCTCTGCTTCCGG    200
                     ||||||.||||.||.||.|||||.|||...|||||||||||||||||.||
BPUM_1280___p    151 ATGTCTCTAGGAATTGCGAAAGGTGCTACAATCACAATCTCTGCTTCTGG    200

BSNT_02330___    201 AGCTGACGAAAACGATGCTCTTAACGCT----TTAGAAGAAACAATGAAA    246
                     ..||||.|||||.|||||.|||   |||    ||| ||||.|||||||||
BPUM_1280___p    201 TTCTGATGAAAATGATGCACTT---GCTGCGCTTA-AAGACACAATGAAA    246

BSNT_02330___    247 AGCGAAGGACTCGGCGAGTAA    267
                     ||.|||||.||.|||||||||
BPUM_1280___p    247 AGTGAAGGCCTAGGCGAGTAA    267


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.