Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02323 and BPUM_1276
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:47
# Commandline: needle
# -asequence dna-align/BSNT_02323___ykvY.1.24716.seq
# -bsequence dna-align/BPUM_1276___ykvY.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02323___ykvY-BPUM_1276___ykvY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02323___ykvY-BPUM_1276___ykvY.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02323___ykvY
# 2: BPUM_1276___ykvY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1147
# Identity: 779/1147 (67.9%)
# Similarity: 779/1147 (67.9%)
# Gaps: 104/1147 ( 9.1%)
# Score: 2473.5
#
#
#=======================================
BSNT_02323___ 1 GTGAATAGAAT--ACAACGCGTCTCTTCATGGCTGAAGGAAGCGGGGCAT 48
.||||..|||| ||| ||.|.|||||.|||||.|||||| ...|.|||
BPUM_1276___y 1 ATGAACCGAATGAACA--GCATGTCTTCTTGGCTAAAGGAA-AAAGACAT 47
BSNT_02323___ 49 AC-TGCCGCATTTATTCATACAAAAGAAAATGTTTTTTACTTAACCGGTT 97
.| .|..||||||||.||||||||.||||||||.|||||..||.|.||.|
BPUM_1276___y 48 TCAAGGTGCATTTATACATACAAAGGAAAATGTGTTTTATCTATCTGGAT 97
BSNT_02323___ 98 TTTACACAGAGCCGCATGAAAGATTAATGGGGTTATTTATTTTTCAAGAA 147
..|.|||||||||||||||||||.|.||||||||.|||.|.||||||||.
BPUM_1276___y 98 ACTTCACAGAGCCGCATGAAAGAGTCATGGGGTTGTTTGTGTTTCAAGAG 147
BSNT_02323___ 148 GAGGAGCCTTTCTTTGTTTGTCCAGGAATGGAAGCAGGACAGGCCCGCAA 197
|..||.||.||.|||.|||..||...||||||||..|.||||||....||
BPUM_1276___y 148 GCAGATCCATTTTTTATTTTGCCTAAAATGGAAGTCGAACAGGCGAAAAA 197
BSNT_02323___ 198 CGCAGGCTGGAATCA--TGAAATCATTGGCTATGCGGATCACGAAAATCC 245
.||.||.||| ||| .||.||||||||.||||..||.||.||.|||||
BPUM_1276___y 198 TGCTGGGTGG--TCAGGCGATATCATTGGTTATGAAGACCATGAGAATCC 245
BSNT_02323___ 246 GTGGGAGCTGAT--AG--AGAAGGCTTTGAAAAA-GCGAAATATCAGCAT 290
.|..||..|.|| || ||.|| |.|||||| |||...||..||||
BPUM_1276___y 246 ATTTGATTTCATTCAGTCAGCAG---TCGAAAAACGCGGTGTAAGAGCA- 291
BSNT_02323___ 291 ACATATGCTTGCGGTAGAAAAGGATTCAATCTCGCTGTC-ACGTGCAGAA 339
|| |...|||||..|.|||||.||.||.||..|||| || |.|.||||||
BPUM_1276___y 292 AC-TCGACTTGCCATTGAAAAAGAGTCGATTCCGCT-TCAAAGAGCAGAA 339
BSNT_02323___ 340 CAGC-TGAAGCATGCGACGGGCGGGGCTCAA---TTTGTTTCAGCAGAAG 385
|||| |.|||| |||.|| .|||||..|| |||||....|||||||
BPUM_1276___y 340 CAGCTTCAAGC-TGCCAC---TGGGGCAGAAACTTTTGTCCGGGCAGAAG 385
BSNT_02323___ 386 AAACACTCAATCAATTTCGCCTGATTAAAGATGACAATGAGATTCGTTTG 435
||...||.||.||.||..|.||||||||||||||...|||.|||..|...
BPUM_1276___y 386 AAGAGCTGAACCAGTTAAGGCTGATTAAAGATGAATCTGAAATTGCTACA 435
BSNT_02323___ 436 CTGAAAGAGGCGGCAAAGCTTGCGGATTACGGTGT-----------TGAA 474
||||||.|.||.||..|..|.||.||..|.||.|| ||||
BPUM_1276___y 436 CTGAAAAAAGCCGCTCAATTGGCAGACGAAGGGGTCAAAATTGGGGTGAA 485
BSNT_02323___ 475 GTCGGCACAGCCGCTTTGCGTGAAGGCATCAGTGAAGTGGAAGTGCTCGC 524
|||.||....|||||.||||..|||...|||||||||||
BPUM_1276___y 486 -----------CGCCTTAAAAGAAGGGATCACCGAAACAGAAGTGCTCGC 524
BSNT_02323___ 525 TCAAATTGAGTATGAGCTGAAGAAAAAAGGAATTCAGGGCATGTCTTTCT 574
|...|||||.||||||||.|||||||||||.|||||.||||||||.||.|
BPUM_1276___y 525 TGTCATTGAATATGAGCTAAAGAAAAAAGGCATTCAAGGCATGTCCTTTT 574
BSNT_02323___ 575 CTACAATGGTTTTATTCGGAGAAAAATCTGGCCAGCCTCATGGAAATCCT 624
|.||.||||||.|.||.||.||||||||.||..|||||||.||||||||.
BPUM_1276___y 575 CGACGATGGTTCTCTTTGGCGAAAAATCAGGAGAGCCTCACGGAAATCCA 624
BSNT_02323___ 625 GGTACAGCCA-CGTTGAAAAAAGGTGATTTTGTTTTATTTGATCTCGGTG 673
|| ||||.|| |.||.||||||||.||.||.||.||||||||.||.||||
BPUM_1276___y 625 GG-ACAGGCAGCCTTAAAAAAAGGCGACTTCGTGTTATTTGACCTTGGTG 673
BSNT_02323___ 674 TTATTCTTGATGGCTATTGCTCTGATATTACAAGAACGTTTGCATACAAA 723
|.||..|.|||||.||||||||.||||||||||||||.|| |||
BPUM_1276___y 674 TCATCGTGGATGGTTATTGCTCAGATATTACAAGAACATT--CAT----- 716
BSNT_02323___ 724 ACCATCA------ATCCGA--AGCAGGAGGCCATTTACGAGACTGTGCTT 765
|.|||| .||.|| ||||..|||.|||.||..|.||.||.||
BPUM_1276___y 717 -CTATCAGGAAGCTTCTGATCAGCAAAAGGACATCTATCAAACCGTCCT- 764
BSNT_02323___ 766 CAAGCGGAAAAAGCCGCGATTGAGGCA---------AGCAAACCCGGTGT 806
|||.||.|..||.|||||| ||.||.||.||.||
BPUM_1276___y 765 --------AAAGGCAGAAATGGAGGCACTTGAAATGAGTAAGCCGGGCGT 806
BSNT_02323___ 807 GAGAATCGGAGATCTGGATTTAACTGCCCGCGGAATCATTGAAAAAGCGG 856
||||||.||.||.|||||.||||..||.|||||..|.||...|.|.||.|
BPUM_1276___y 807 GAGAATTGGGGACCTGGACTTAAAAGCACGCGGGCTGATCACAGATGCTG 856
BSNT_02323___ 857 GATACGGTGACTATTTTCCTCACCGGCTTGGGCATGGACTCGGAATTTCT 906
||||.||.||||||||.||||||||.|||||.|||||.||.||..|.|||
BPUM_1276___y 857 GATATGGAGACTATTTCCCTCACCGCCTTGGACATGGTCTAGGGGTGTCT 906
BSNT_02323___ 907 GTCCATGAGTATCCATCCATGAGCCAGGCCAACGATACACTGCTGCAGGA 956
||.|||||||.|||.||.|||||||||||.||.|||...||.||.||.||
BPUM_1276___y 907 GTTCATGAGTTTCCTTCGATGAGCCAGGCAAATGATGATCTTCTCCAAGA 956
BSNT_02323___ 957 AGGCATGGTCTACACGATCGAACCGGGGATATATGTGCCTGAGA-TCGGC 1005
|||||||||.||.||||||||||||||.||.|||||.||.| || |||||
BPUM_1276___y 957 AGGCATGGTGTATACGATCGAACCGGGAATCTATGTCCCAG-GAGTCGGC 1005
BSNT_02323___ 1006 GGCGTGCGCATTGAGGATGACGTTCACGTAACAAAGGAAGGAGCAGTTGC 1055
||.||..|.|||||.|||||.||.|...|.|||..|||.||..||||..|
BPUM_1276___y 1006 GGTGTCAGAATTGAAGATGATGTACTGATTACAGCGGATGGTCCAGTCAC 1055
BSNT_02323___ 1056 TCTGACCCAATATCCAAAGGA-------ATTAATCATACTGCCGTAA 1095
|.|.|||.|.|||||.||.|| ||| |||| .||||
BPUM_1276___y 1056 TTTAACCAATTATCCGAAAGAGCTGACGATT-ATCA------AGTAA 1095
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