Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02320 and BPUM_1275
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:47
# Commandline: needle
# -asequence dna-align/BSNT_02320___ykvW.1.24716.seq
# -bsequence dna-align/BPUM_1275___ykvW.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02320___ykvW-BPUM_1275___ykvW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02320___ykvW-BPUM_1275___ykvW.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02320___ykvW
# 2: BPUM_1275___ykvW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2055
# Identity: 1351/2055 (65.7%)
# Similarity: 1351/2055 (65.7%)
# Gaps: 276/2055 (13.4%)
# Score: 3974.0
#
#
#=======================================
BSNT_02320___ 1 ATGAATGAACAAGTTATCGTTCAACGCGACCCGCACGAGCCATTGA--AA 48
|||||||| .||.|| |||..|||| ||
BPUM_1275___y 1 ATGAATGA-------------GAATGC----------AGCACTTGATCAA 27
BSNT_02320___ 49 ACAGACA----AGAGGGAA---AAA-------------AACTGGGCACAG 78
||| ||| |.|.|||| ||| || |||||||||
BPUM_1275___y 28 ACA-ACAAATCAAAAGGAATCGAAATGGTCCCTTCATCAA-TGGGCACAG 75
BSNT_02320___ 79 CACGCGGAGCTTATTGCTGCACTTGTATCAGGCG----CTCTTATTTTGG 124
||||..||..|.||.||.||| .||||| ||| .|||.||||||.
BPUM_1275___y 76 CACGGAGAATTAATAGCAGCA--GGTATC--GCGGGGATTCTCATTTTGA 121
BSNT_02320___ 125 CAGGCTGGCTCTTATCCGGAT---ATCAGGT--ATTA-TCCATAATACTT 168
..||.|||.|.||| ..|||| |.||.|| |.|| |||.| ||.||
BPUM_1275___y 122 TTGGATGGATGTTA-AAGGATGAGACCATGTGGAGTATTCCTT--TATTT 168
BSNT_02320___ 169 TTCTTGCTGGCTTTTGTGATCGGCGGATTTGCTAAAGCAAAGGAAGGAAT 218
.|| ||.||.|||.|.||.||.||.|||||.||.||.||.||||||||
BPUM_1275___y 169 ATC---CTTGCGTTTATTATTGGAGGTTTTGCAAAGGCGAAAGAAGGAAT 215
BSNT_02320___ 219 CGAAGAAACAC---TCGAATCCAAAACGC-TGAATGTAGAACTTTTAATG 264
.|||||||| | ||| ||.|||| || |||||||.|||||.||||||
BPUM_1275___y 216 TGAAGAAAC-CATTTCG--TCTAAAA-GCTTGAATGTTGAACTGTTAATG 261
BSNT_02320___ 265 ATTTTCGCTGCCGTTGGTTCCGCCTTGATCGGATACTGGGCAGAGGGTGC 314
|||||.||.||..|.||.||.||..|.||.|||||.|||||||||||.||
BPUM_1275___y 262 ATTTTTGCAGCGATAGGCTCAGCGATCATTGGATATTGGGCAGAGGGCGC 311
BSNT_02320___ 315 TATTTTAATATTTATTTTTTCCTTAAGCGGAGCTTTAGAAAC--ATACAC 362
.||.|||||.||||||||.||..||||.||.||..|.||||| |||||.
BPUM_1275___y 312 GATCTTAATTTTTATTTTCTCACTAAGTGGTGCGCTTGAAACGTATACAT 361
BSNT_02320___ 363 GATGAATAAAAGCAGCAGA--GATTTAACGTCTTTAATGCAGC-TTGAGC 409
.| ||||||||.| ||| ||||||||..|||||||| ||| |.|..|
BPUM_1275___y 362 CA--AATAAAAGTA--AGAAGGATTTAACAGCTTTAATG-AGCATCGCAC 406
BSNT_02320___ 410 CTGAAGAAGCGAC----ATTGATGGTCA--ATGGTGAAAC----CAAAAG 449
||||.|||||||| |||||.| | |||||...|| ||||
BPUM_1275___y 407 CTGATGAAGCGACTTTAATTGAAG---AAGATGGTACGACTATTCAAA-- 451
BSNT_02320___ 450 AGTTC-CGGTTTCA-GACTTGCAGGCC-GGTGATATGATTGTGATCAAAC 496
|| |.|.|||| .|.|..|| || ||||||...||..||||||||.
BPUM_1275___y 452 ---TCGCTGCTTCATCATTAACA--CCAGGTGATCGTATCATGATCAAAG 496
BSNT_02320___ 497 CTGGAGAACGCGTAGCGGCAGACGGTATCA-TTGAATCGG--GCTCGACA 543
||||.|||||..|.||.|||||.|||.|.| ||.||.||| | .|||
BPUM_1275___y 497 CTGGGGAACGTATTGCTGCAGATGGTGTGATTTTAAGCGGAAG---AACA 543
BSNT_02320___ 544 AGTCTTGACGAGTCGGCTTTAACAGGTGAATCAATGCCTGTAGAAAAAAA 593
|||.|.||.||.||.||..|.||.||.||.||..||||...||||||
BPUM_1275___y 544 AGTGTAGATGAATCTGCGCTCACGGGCGAGTCTGTGCCACAAGAAAA--- 590
BSNT_02320___ 594 CAG----AGGCGACGCTGTATTCACAGGAACGGTGAATCGCAATGGCTCC 639
|| ||||||.|..|||||..|||||||.||.||....|||||.||.
BPUM_1275___y 591 -AGGGCAAGGCGAAGACGTATTTGCAGGAACAGTAAACTTAAATGGTTCT 639
BSNT_02320___ 640 TTGACTGTCCGTGTCACGAAAGCA-AATGAAGATTCGTTATTCAGAAAAA 688
||.||.||....|||||.||| || ||||||||..||.|.|||...||||
BPUM_1275___y 640 TTAACAGTAGAAGTCACCAAA-CATAATGAAGAAACGCTTTTCCATAAAA 688
BSNT_02320___ 689 TTATCAAACTGGTTGAATCAGCGCAAAATAGTGTTTCACC-CGCTCAGGC 737
|.||.|||||.||.|||||.||.|||.|.|||||.||.|| .|| |||||
BPUM_1275___y 689 TAATTAAACTTGTCGAATCGGCTCAAGAAAGTGTGTCGCCAAGC-CAGGC 737
BSNT_02320___ 738 TTTCATCGAACGATTTGAAAATGCTTATGTGAAAGGTGTGCTAATTG--- 784
.||.||.|||..|||.|||...||.|||||.|||||||| ||||
BPUM_1275___y 738 ATTTATTGAAAAATTCGAAGGGGCATATGTAAAAGGTGT----ATTGATC 783
BSNT_02320___ 785 -CGGTGGCGCTCCTTTTATTCG---TCCCGCACTTTGCGCTGGGCTGGAG 830
|.||.||| .|||||.|.| |.||.|||||||..||.||||||||
BPUM_1275___y 784 ACCGTTGCG---ATTTTAATGGTGCTACCTCACTTTGTACTAGGCTGGAG 830
BSNT_02320___ 831 CTGGAGTGAAACCTTCTACCGCGCAATGGTGTTTATGGTTGTCGCGTCAC 880
...||||||||||||||||||.||.||||||||||||||.||.||.||||
BPUM_1275___y 831 TATGAGTGAAACCTTCTACCGGGCCATGGTGTTTATGGTCGTAGCCTCAC 880
BSNT_02320___ 881 CTTGTGCGCTTGTCGCCTCTATTATGCCGGCGGCGCTGTCCCTGATTTCA 930
|||||||||||||.||.|||||||||||.||.||..||||.|||||.|||
BPUM_1275___y 881 CTTGTGCGCTTGTGGCATCTATTATGCCAGCTGCTTTGTCACTGATCTCA 930
BSNT_02320___ 931 AATGGCGCCCGCAACGGTATGCTTGTGAAAGGAAGCGTCTTTCTTGAACA 980
||.||.||..|.|||||.||||||||.|||||.|||||||||.|.|||.|
BPUM_1275___y 931 AACGGTGCAAGAAACGGAATGCTTGTCAAAGGGAGCGTCTTTTTAGAAAA 980
BSNT_02320___ 981 GCTGGGCTC-AGT-GCAAATGATCGCCTTTGATAAAACCGGCACTGTAAC 1028
|||.|||.| ||| || |||||.||.|||||.|||||.||.||..|.||
BPUM_1275___y 981 GCTCGGCACAAGTAGC--ATGATTGCTTTTGACAAAACGGGGACGATTAC 1028
BSNT_02320___ 1029 AAAAGGCCAGCCTGCCGTAGAGAC-------GAT-TAGAATAGCAGAAGG 1070
||..||..||||.||.||||| || ||| ..||| ||.|.|||.
BPUM_1275___y 1029 AAGCGGAAAGCCAGCTGTAGA-ACAGGTGTTGATCGCGAA-AGGACAAGA 1076
BSNT_02320___ 1071 ATTCAGTGAAGCGGAAGTTCTTGAGGCTGTCTATGCCATCGAAATGCAAT 1120
| |||||.|...||..|.|.||..|.|||...||.||||..||||
BPUM_1275___y 1077 A------GAAGCTGCTTTTTATCAAGCGCTTTATCAAATTGAAAGTCAAT 1120
BSNT_02320___ 1121 CAAGCCATCCGCTCGCCCAAGCCATA------ACGGCGTAC----GC--- 1157
|||.|||.||..|.||..||||.||| |.||| || ||
BPUM_1275___y 1121 CAAACCACCCATTAGCGAAAGCGATATCTGATATGGC--ACAAGAGCAAC 1168
BSNT_02320___ 1158 ----TGAAAGCCGCGGCGTGAATCAGTCCGGCTACATAT--CTATAGAAG 1201
.|||| ||| |.||| |||.| |.||.||||
BPUM_1275___y 1169 AAATAGAAA----------GAA------CAGCT-CATGTCACCATTGAAG 1201
BSNT_02320___ 1202 AAACCTCAGGGTTTGGCGTTATGGCAGAAGTGTCGGGTGCGAAA--TGGA 1249
|||||||.||.|||||.||.|.||||.||.||...||| |||| |||.
BPUM_1275___y 1202 AAACCTCTGGTTTTGGTGTAAAGGCACAATTGAATGGT--GAAACGTGGC 1249
BSNT_02320___ 1250 AGGTCGGTAAAGCAGGTTTTATCGGCGAGG---AAATGG-CAGC-ACAAT 1294
.|.|.||.||...||..|||...|||.||| .||||| |||| |.|
BPUM_1275___y 1250 GGATTGGGAAGAAAGACTTTGCAGGCAAGGCTCCAATGGACAGCGAGA-- 1297
BSNT_02320___ 1295 TTTTGAAACAAAC-----AGCATCAGATGTCATTCAAAGCGGTCATACAA 1339
||| ||.||.| ||||.| |.|| |.|||..||..|||||.
BPUM_1275___y 1298 --TTG-AAGAAGCTGGTGAGCAAC---TTTC--TGAAAAAGGATATACAG 1339
BSNT_02320___ 1340 TTGTATTTGTGAAAAAGGATGATCAAATA---GCAGGCTGTATCGCACTG 1386
|.||.|.|||..||||| ||||||.|| |..||.||..|||..||.
BPUM_1275___y 1340 TGGTGTATGTTCAAAAG---GATCAAGTAGTCGTTGGGTGCCTCGGCCTT 1386
BSNT_02320___ 1387 AAGGACCAAATCAGGCCTGAAGC----AAAAGAGGTCATGGAAGAACTGA 1432
|||||.|||||.||.|||||||| |||| |.||..||||.||||
BPUM_1275___y 1387 AAGGATCAAATTAGACCTGAAGCGAAGAAAA----TGATTCAAGAGCTGA 1432
BSNT_02320___ 1433 ACCGACTT-GGGATTAAAACGGCCATGCTGACAGGAGATCACGAAGACAC 1481
| .||.|| ||.||..||||.|.||||||.|||||||||||..||.|.||
BPUM_1275___y 1433 A-TGATTTAGGTATCCAAACCGTCATGCTAACAGGAGATCAGCAAAAAAC 1481
BSNT_02320___ 1482 GGCTCAAGCGATTGCCAAGGAAGCCGGCATGACAACTGTCGTAGCAGAAT 1531
.|||.||||.|||||..|||||||||||||...|||.||.||.||.||.|
BPUM_1275___y 1482 AGCTGAAGCCATTGCGCAGGAAGCCGGCATCCAAACAGTTGTTGCTGAGT 1531
BSNT_02320___ 1532 GCCTGCCTGACCAAAAAGTGAATGA----AATCAAACGGTTAAAAGAAGA 1577
|.|||||.||..||||.||..|||| |||||| .|||||| ||.|
BPUM_1275___y 1532 GTCTGCCAGATGAAAAGGTCCATGAGGTCAATCAA---CTTAAAA-AACA 1577
BSNT_02320___ 1578 ATTCGGAA---CGATTGCA--ATGGTGGGTGACGGAATCAATGATGCGCC 1622
| |||| |||| || |||||.||.|||||||||||||||||.||
BPUM_1275___y 1578 A---GGAAACTCGAT--CATCATGGTAGGAGACGGAATCAATGATGCACC 1622
BSNT_02320___ 1623 GGCGCT---CAAAGCGGCGGATGTCGGCATTGCGATGGGCGGCGGAACAG 1669
|||.|| || |.||.|||||.||..|||||||||||||.||.||||
BPUM_1275___y 1623 GGCACTTGCCA---CAGCAGATGTGGGGGTTGCGATGGGCGGGGGCACAG 1669
BSNT_02320___ 1670 ATGTAGCACTT-GAGACCGCTGATATGGTCCTCATGAAAAACGATTTGAA 1718
|.||.|| ||| ||.||.||.|||.||.||.|.|||||||||.||||.||
BPUM_1275___y 1670 ACGTGGC-CTTAGAAACAGCAGATTTGATCTTAATGAAAAACAATTTAAA 1718
BSNT_02320___ 1719 AAAGCTCGTAAACATG-TGCCGCTTGTCTCGGAAAATGAACAGGATTATC 1767
.||..|...|||.||| |.|..||| ||..|.||.|||||..|.||.||.
BPUM_1275___y 1719 TAACTTAACAAAGATGATTCGTCTT-TCAAGAAAGATGAATCGAATCATT 1767
BSNT_02320___ 1768 AAACAAAATATCGTGTTTTCTC--TAGCTGTAATCTGCCTGCTGATTTGT 1815
||.|||||||| |.||||||| ||.|.||.||.||..||.|.||||||
BPUM_1275___y 1768 AAGCAAAATAT--TATTTTCTCATTAACGGTGATTTGTTTGTTAATTTGT 1815
BSNT_02320___ 1816 GCAAACTTTTTGCAGGTGATGGAATTGCCATTTGGCGTGATTGGTCATGA 1865
||.|||||.||.||.|||.|.||.||.||.||||||||.||.||.|||||
BPUM_1275___y 1816 GCGAACTTCTTACAAGTGCTTGATTTACCGTTTGGCGTTATCGGGCATGA 1865
BSNT_02320___ 1866 GGGCAGCACGATTTTGGTCATACTAAACGGTTTAAGACTCCT------AA 1909
.||.||.||||||||||||||..||||.||..|..|.||.|| |.
BPUM_1275___y 1866 AGGAAGTACGATTTTGGTCATTTTAAATGGACTGCGTCTACTTCGTGCAT 1915
BSNT_02320___ 1910 AATAA 1914
..|||
BPUM_1275___y 1916 CTTAA 1920
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