Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02315 and BPUM_1273
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:46
# Commandline: needle
# -asequence dna-align/BSNT_02315___ykvU.1.24716.seq
# -bsequence dna-align/BPUM_1273.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02315___ykvU-BPUM_1273.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02315___ykvU-BPUM_1273.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02315___ykvU
# 2: BPUM_1273
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1387
# Identity: 931/1387 (67.1%)
# Similarity: 931/1387 (67.1%)
# Gaps: 119/1387 ( 8.6%)
# Score: 2924.5
#
#
#=======================================
BSNT_02315___ 1 ATGAATCGATTTGTGAAAGGGATCATTCTTTTATCCATTGCCGCCTTTTT 50
||||||||||||||.||||||.|||||||..||||..||||.||.|||.|
BPUM_1273 1 ATGAATCGATTTGTAAAAGGGGTCATTCTGCTATCTGTTGCAGCTTTTAT 50
BSNT_02315___ 51 CGCTGAATGCCTTGAATTTGTCGTCAATATGATTTTGGCGCGGGAGCTTG 100
.||.||.||..|.||.|||.|.||||||||||||||.|||.|.|||||||
BPUM_1273 51 TGCGGAGTGTATAGAGTTTTTAGTCAATATGATTTTAGCGAGAGAGCTTG 100
BSNT_02315___ 101 GCGAGCATGGGATGGGGCTTTACATGAGTAT--TTTGCCCACGATCTTTT 148
|.||.|||||.|||||.||.||.|||||||| || ||| |||.||.
BPUM_1273 101 GAGAACATGGAATGGGTCTATATATGAGTATCCTT---CCA--ATCATTA 145
BSNT_02315___ 149 TAATT---ATTGTCATCGCGAGCCTGGAACTGCCGATATCCATTTCTAAA 195
|..|| .||||.||.||.|||.|.||.|||||..|.||.|||||||||
BPUM_1273 146 TGCTTGTCCTTGTGATTGCCAGCTTAGAGCTGCCAGTCTCTATTTCTAAA 195
BSNT_02315___ 196 TTCATTGCCGAGTCAAATCCTAAGCTTCATGAAAGCATGCTGAGGCACGC 245
||||||||.||.||..||.....|||.|||.||||.|||||..|.||.||
BPUM_1273 196 TTCATTGCAGAATCGCATGAGCGGCTCCATAAAAGTATGCTCCGCCATGC 245
BSNT_02315___ 246 TTTCAGAATGACAGCCATTTTTACTG-CTTTTTCTAC---------TGCT 285
.||.|.|||||| || |..||.|| |.|.|.|.|| .|||
BPUM_1273 246 ATTTAAAATGAC-GC---TCGTAGTGACATGTACAACAACAGGGATCGCT 291
BSNT_02315___ 286 GCCGCTAGTATTGCGCTTCCGTTTATTCCGGTATTTGATACATACCACCC 335
| ||.|.||.||| |||||.|||||.||.|||.|..|.||.||.||
BPUM_1273 292 G-CGATTGTCTTG-----CCGTTCATTCCTGTGTTTCAGTCGTATCATCC 335
BSNT_02315___ 336 GTTTATTAAAGGGATTGTCATCGGCT-----TAATTCCTGTTGTCGCCTT 380
|.|.||.||||||.|||| ||| |.|||||..|..|.||.||
BPUM_1273 336 GCTCATGAAAGGGCTTGT-----GCTGTCTCTTATTCCAATCATTGCGTT 380
BSNT_02315___ 381 TACTTCAATCGCCAGGGGCTACTTTATGGGTGTGCAGAAAATGGGGAAGA 430
|||.||.|||||..|.|||||.||||||||...||||.|||||||.|..|
BPUM_1273 381 TACCTCGATCGCACGCGGCTATTTTATGGGAAAGCAGCAAATGGGCAGAA 430
BSNT_02315___ 431 TCGCAATTGCCAATGTGCTGAAAAAAATCATCCAGCTCTTGTGCTTATTC 480
||||..|.||.|||.|||||||.||||..||||||||..|.||.||.||.
BPUM_1273 431 TCGCTCTGGCGAATATGCTGAAGAAAACGATCCAGCTGATCTGTTTGTTT 480
BSNT_02315___ 481 CTCTTTTTTCAATGGTACTCATTTGA-ATTGGACATGGCTGTGCTGATTT 529
.|.||.|||||.|||||.||.||||| ||| ||.|..||.||.||.|||.
BPUM_1273 481 TTGTTCTTTCATTGGTATTCCTTTGATATT-GAAACTGCGGTTCTCATTG 529
BSNT_02315___ 530 CCTTGTTTGTTCTAGTCGTGAGTGATGTGGTCGTGCTTGTTTATTTATAT 579
||.|...|||..|.||||.|||||||.|.|||||..||.||||||||||.
BPUM_1273 530 CCATCGGTGTCATTGTCGCGAGTGATCTCGTCGTTTTTATTTATTTATAC 579
BSNT_02315___ 580 TCACAATTTATCATGGC----AAGGCGGGCGTTATCCGGCCAGCAGCACA 625
||.||||...||||||| ||.||.|.|..|.||.||.|.|
BPUM_1273 580 TCCCAATACGTCATGGCGAAAAATGCTGTCCATGTCAGGTCTG------- 622
BSNT_02315___ 626 TTCATTTGCGCGGAAAG-------GATGTAAGGAAAAGACTGCTTGCTGT 668
||.|.|| ||| ||.||.||.||..||.|..|.||.||
BPUM_1273 623 TTGAATT-------AAGAGGGGGTGACGTGAGAAAGCGATTATTAGCCGT 665
BSNT_02315___ 669 TTCAATTCCTACAACAGGACTGCGCATTTTTCATGCGGTTGTCAATGCAA 718
.||.|||||.|||||.||..||||.||||||||||||.|||.||||||.|
BPUM_1273 666 CTCTATTCCGACAACGGGCATGCGGATTTTTCATGCGATTGCCAATGCCA 715
BSNT_02315___ 719 TTGAACCCTTTTTAGTAAAAGGAGCTCTTTTGGCTGCGGGCGTTGCCGGG 768
|.|||||.||||||.|.|||||.||.|||.|.||.||.|||.|..|.||.
BPUM_1273 716 TAGAACCGTTTTTAATCAAAGGCGCACTTATTGCCGCAGGCATCTCTGGC 765
BSNT_02315___ 769 ACAGCGGCGATCGATCAATACGGAATGCTGGCAGGAGTGGCTGTGACGAT 818
|||...||..|.|||||.|||||.||||||||.||.||.||..||.||||
BPUM_1273 766 ACACTTGCTGTTGATCATTACGGCATGCTGGCTGGTGTCGCGATGTCGAT 815
BSNT_02315___ 819 AGGGTCGTTCCCTGCTTTTATTGCCCATTCGTTAATGGTCGTCATGATAC 868
.||.|..||.||.||.|||||.||.|||||..|.|||.||||.|||||.|
BPUM_1273 816 CGGTTTTTTTCCGGCGTTTATCGCTCATTCCATCATGATCGTGATGATTC 865
BSNT_02315___ 869 CGAGTATTTCGGAAGCTTATGCACTTT--CTCAGTATGACATCGTGTTAA 916
|||.|.|.||.|||||.|||| |||| .|||||||||..|||||..||
BPUM_1273 866 CGAATGTCTCTGAAGCCTATG--CTTTAGGTCAGTATGATCTCGTGAAAA 913
BSNT_02315___ 917 AAAGGCTGAAGCAGTCGATTTTCATTACATTAGGTTACGGTATACCTGCC 966
||.|..|.|.||||.|||||.||||||||||.||.|||||..||||.||.
BPUM_1273 914 AACGTGTCAGGCAGGCGATTCTCATTACATTTGGGTACGGCGTACCGGCA 963
BSNT_02315___ 967 GTCTGGGTCATGTTCCAGTTTGCGGGACCTCTCACGCATTTGTTTTTTCA 1016
|||..|||.||||...|.|||||....||.|||||.||..|.||||||.|
BPUM_1273 964 GTCATGGTGATGTATTATTTTGCTTATCCGCTCACACAGCTCTTTTTTGA 1013
BSNT_02315___ 1017 CTCTCCTGAAGC-GCAGTATTACTTGCAGCTGTTGTGGCCTTACTTTCTC 1065
.||.||..|||| ||.|| .|||||.||||||.|.|||||.||||||.|.
BPUM_1273 1014 TTCACCGCAAGCTGCTGT-CTACTTACAGCTGCTTTGGCCGTACTTTTTA 1062
BSNT_02315___ 1066 TTTCATCTGTTTGTCATGCCGCTGCAGGCGTGCTTAATCGGGATGGGCTT 1115
|..||.||||||||.|||||..|.||.||||||||||||||.|||||..|
BPUM_1273 1063 TGCCACCTGTTTGTGATGCCATTTCAAGCGTGCTTAATCGGTATGGGACT 1112
BSNT_02315___ 1116 TGTGAAAGAGGCTTTT--TATCACAATGTATGGAGCCATATCGTTGCGCT 1163
..|.|||||.| |.|| || ||.|||.|||||...||||||||..||.|
BPUM_1273 1113 CATTAAAGATG-TGTTCCTA-CATAATATATGGGTGCATATCGTCTCGTT 1160
BSNT_02315___ 1164 AAGTATGATGTATGTACTGGGATCAATGGAGAATCTGCAA-ATGCTCGGG 1212
....|||.|||||.|.||.||||||||.|| ||.||..|| |||.|.|||
BPUM_1273 1161 TTCAATGGTGTATTTTCTCGGATCAATTGA-AAGCTTAAATATGATGGGG 1209
BSNT_02315___ 1213 ATTATCCTTGGAATGAACACTGGCATGATTCTTTTGACGAGC-CTGCACT 1261
.|.||..|.||.|||||.||.||||||.|.||.||||| .|| |||||.|
BPUM_1273 1210 GTGATATTAGGGATGAATACGGGCATGCTCCTCTTGAC-TGCTCTGCATT 1258
BSNT_02315___ 1262 ATGCCACGATCTGCAAAGCATTGAAG------GTATCCGTATTCCTTACG 1305
||||.|||||.||.|| |.|| ||.|||.|.||.||||
BPUM_1273 1259 ATGCGACGATTTGTAA------GGAGCTCGGTGTTTCCATGTTTCTTA-- 1300
BSNT_02315___ 1306 GGAGGGACCAGAACGCCGCGAATTG----AAGGATGA 1338
||| || |||.||||
BPUM_1273 1301 -------------------GAA-TGAAAAAAGCATGA 1317
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