Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02306 and BPUM_1263
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:46
# Commandline: needle
# -asequence dna-align/BSNT_02306___ykvJ.1.24716.seq
# -bsequence dna-align/BPUM_1263.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02306___ykvJ-BPUM_1263.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02306___ykvJ-BPUM_1263.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02306___ykvJ
# 2: BPUM_1263
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 664
# Identity: 508/664 (76.5%)
# Similarity: 508/664 (76.5%)
# Gaps: 11/664 ( 1.7%)
# Score: 1918.0
#
#
#=======================================
BSNT_02306___ 1 ATGAAAAAAGAAAAAGCAATTGTCGTATTTAGCGGCGGTCAAGACAGCAC 50
||||||||.|||||||||.|.||.||.||||||||.||.||||||||.||
BPUM_1263 1 ATGAAAAATGAAAAAGCAGTCGTTGTCTTTAGCGGGGGACAAGACAGTAC 50
BSNT_02306___ 51 AACATGCTTATTGTGGGC-CTTAAAAGAATTCGAAGAAGTCGAAACGGTG 99
||||||.|||||.||||| ||| .||.||||||||||.||.|||||.|||
BPUM_1263 51 AACATGTTTATTATGGGCACTT-CAACAATTCGAAGAGGTAGAAACCGTG 99
BSNT_02306___ 100 ACTTTTCATTATAATCAGCGACATTCGCAGGAAATTGAAGTGGCTAAATC 149
||.|||||||||||||||||.|||....|.||||||||.||.||.|||..
BPUM_1263 100 ACCTTTCATTATAATCAGCGTCATCAAGAAGAAATTGATGTCGCCAAAAG 149
BSNT_02306___ 150 CATTGCGGAAAAGCTTGGTGTGAAAAATCATTTGCTTGATATGTCACTTT 199
.||||||||.|||.|.||||||||.||||||.|..|.|||||||||||||
BPUM_1263 150 AATTGCGGATAAGTTAGGTGTGAAGAATCATCTATTAGATATGTCACTTT 199
BSNT_02306___ 200 TAAATCAGCTTGCACCGAATGCCCTGACAAGAAATGATATTGAGATAGAA 249
|.||||||||.|||||.|||||..|.||||||.||||.|||||.||.|||
BPUM_1263 200 TGAATCAGCTGGCACCAAATGCTTTAACAAGAGATGACATTGATATTGAA 249
BSNT_02306___ 250 GTAAAAGACGGAGAACTGCCATCCACATTCGTCCCTGGCCGCAATTTGGT 299
|.||||||.|||||.|||||.|||||.||.||.||.||..|.||.||.||
BPUM_1263 250 GAAAAAGAAGGAGAGCTGCCTTCCACGTTTGTACCAGGAAGAAACTTAGT 299
BSNT_02306___ 300 ATTCTTATCCTTTGCGTCTATCCTGGCTTTCCAAATTGGCGCGCGCCACA 349
.||||||||||||||.|||||.||.||.|..|||||.||.||..|.||.|
BPUM_1263 300 GTTCTTATCCTTTGCTTCTATTCTTGCATATCAAATCGGAGCAAGACATA 349
BSNT_02306___ 350 TTATTACAGGAGTTTGCGAGACAGACTTCAGTGGTTATCCTGACTGCCGT 399
||||.|||||.||.||||||||||||||.||.||.|||||.||.||||||
BPUM_1263 350 TTATCACAGGTGTATGCGAGACAGACTTTAGCGGCTATCCAGATTGCCGT 399
BSNT_02306___ 400 GACGAATTCGTGAAATCTTGCAATGTCACGGTAAATCTGGCAATGGAGAA 449
|||||.||.||.||.||.||.|||||.||.||||||.||||.|||||.||
BPUM_1263 400 GACGAGTTTGTAAAGTCATGTAATGTTACAGTAAATTTGGCGATGGAAAA 449
BSNT_02306___ 450 GCCGTTTGTGATCCACACGCCTCTCATGTGGCTCAATAAGGCGGAAACGT 499
.||.|||||.|||||.||.||.||.||||||||||||||.||.|||||.|
BPUM_1263 450 ACCATTTGTCATCCATACACCACTTATGTGGCTCAATAAAGCAGAAACAT 499
BSNT_02306___ 500 GGAAGCTTGTAGATGAGCTTGGCGCGCTGGAGTTTGTAAAAAACAACACG 549
||||..|.|.|||.|||||....||..|.||.|||||.|||||..|.||.
BPUM_1263 500 GGAAATTGGCAGACGAGCTGAATGCATTAGATTTTGTGAAAAATGAAACA 549
BSNT_02306___ 550 CTGACATGCTATAACGGCATCATCGCCGACGGCTGCGGCGAATGTCCGGC 599
||.||.||||||||.||||||||..|.||.||||||||.||||||||.||
BPUM_1263 550 CTCACTTGCTATAATGGCATCATTTCTGATGGCTGCGGGGAATGTCCTGC 599
BSNT_02306___ 600 ATGTCACCTTCGTTCAAAAGGTTATGAAGAATATATGATGATGAAAGGAG 649
.|||.|.|||||...|||.||.|||||....||.|||...||| ||||||
BPUM_1263 600 GTGTAAACTTCGGAAAAAGGGCTATGACACGTACATGGAAATG-AAGGAG 648
BSNT_02306___ 650 AGCGTGCATAA--- 660
|||.||
BPUM_1263 649 -----GCAAAATAA 657
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