Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02304 and BPUM_1262
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:46
# Commandline: needle
# -asequence dna-align/BSNT_02304___ykvI.1.24716.seq
# -bsequence dna-align/BPUM_1262___ykvI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02304___ykvI-BPUM_1262___ykvI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02304___ykvI-BPUM_1262___ykvI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02304___ykvI
# 2: BPUM_1262___ykvI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1118
# Identity: 714/1118 (63.9%)
# Similarity: 714/1118 (63.9%)
# Gaps: 148/1118 (13.2%)
# Score: 2075.0
#
#
#=======================================
BSNT_02304___ 1 ATGGAACAATCAAAAGGGTCTGCAAGTCAGCTTGCTTTTGTGTATGTCGG 50
|||.|||..|||||.|..||.||...|||||||||.|||||.|||||.||
BPUM_1262___y 1 ATGAAACGTTCAAATGAATCCGCTTTTCAGCTTGCCTTTGTATATGTAGG 50
BSNT_02304___ 51 CACAGTAGTCGGAGCTGGATTTGCGACTGGGAGGGAAATTGTTGAGTTTT 100
.|||||.||.||||||||.||||||||.||.|..|||||.||.||.||||
BPUM_1262___y 51 AACAGTGGTTGGAGCTGGGTTTGCGACCGGAAAAGAAATCGTAGAATTTT 100
BSNT_02304___ 101 TTCTGAAGTTC-----GGCTGGTTCGGTTTATTCGGCATTCTCG-TCAGC 144
|| |||| ||||||.|.||.|||||||| |.|||.| |.|||
BPUM_1262___y 101 TT-----GTTCGTTTTGGCTGGATTGGATTATTCGG-AATCTTGATTAGC 144
BSNT_02304___ 145 GGCGGAATGTTTACGTTTCTGGGCGCCAAGCTGATGATCATTTCAAAGCG 194
||||..||.|||||....||.||.||.||..|||||.|||||||.||.||
BPUM_1262___y 145 GGCGCTATTTTTACTGGACTTGGGGCAAAAATGATGCTCATTTCTAAACG 194
BSNT_02304___ 195 AATCAATGCCAAGTCATACCAAGAAATGAACATCTTTTTGTTCGGGGCGG 244
|||..|.||..||||.||.|||||.||||||...|||||.||.||.||.|
BPUM_1262___y 195 AATTGAAGCAGAGTCTTATCAAGATATGAACCGGTTTTTATTTGGCGCAG 244
BSNT_02304___ 245 CGGCTGGGCGGATTATCAATGTATTTATGCTGTTTGTTCTCCTCGGAGTT 294
|.||..|.|||..|||.|||||..|.|||.|.|||.||.|.||.||.||.
BPUM_1262___y 245 CTGCCAGTCGGTATATTAATGTCGTCATGTTTTTTATTTTACTAGGCGTC 294
BSNT_02304___ 295 ACATCTGTCATGCTTTCAGGAGCAGGGGCGCTTTTTGAGGAACAATTGGG 344
||.||.||.|||.||||.||.|||||.||..|.|||||.||.||..|.||
BPUM_1262___y 295 ACTTCAGTGATGATTTCTGGCGCAGGTGCTATATTTGAAGAGCAGCTTGG 344
BSNT_02304___ 345 GATGTCCGCTCAGA------TTGGGATGCTTATT-ACAATCGGTCTGAGC 387
.||.|| || .|||||| |||.|| ||||||..||||||.
BPUM_1262___y 345 CATATC------GAAGGAATATGGGAT-CTTTTTAACAATCATTCTGAGT 387
BSNT_02304___ 388 TTAATTGTGATGACT----AGAGGAGTAAAAGGCATT-TTCGGTGTCAAT 432
.|.|||||| || |.||||..|||||| ||| ||.|||||.|||
BPUM_1262___y 388 GTGATTGTG----CTTTTGAAAGGATCAAAAGG-ATTATTTGGTGTGAAT 432
BSNT_02304___ 433 GTGTTTGTTGTTCCC----CTTTTAATCCTCTTTTCAATGATTGTGGTGG 478
||..|.||.| |||| ||| ||..||||||||.||||.|||.|..
BPUM_1262___y 433 GTTCTCGTCG-TCCCAATGCTT---ATTTTCTTTTCATTGATCGTGTTTC 478
BSNT_02304___ 479 CCGACTCTTTTATATTCAGC------GAA--------TCACGAAACGCAG 514
..||.||.||..|.||.||| ||| ||..|.|..|||
BPUM_1262___y 479 TTGATTCATTCGTTTTTAGCAGTAGTGAAAGTTATGTTCTTGCATTGCA- 527
BSNT_02304___ 515 CTCAGTGGGTTTGGCCGCATCGATGG-GATTGGCTGTTATCAGCCTTTTC 563
|.||||| ||.|| ||.|||.|.||||||||..|.||
BPUM_1262___y 528 ---AATGGGT-----------GAGGGAGAGTGGATTTTATCAGCTATCTC 563
BSNT_02304___ 564 TTACGGGGCTTTGAATTTATCGCTTGCCCAAGCAGTTTTGGTTCCGCTGG 613
.||.||.|||||.|||||..|.|||.|.|||||.|||||.||.||..|.|
BPUM_1262___y 564 ATATGGAGCTTTTAATTTGGCACTTTCTCAAGCCGTTTTAGTGCCCGTCG 613
BSNT_02304___ 614 CGAATGAAATGTCCTCGGAGAAAGTGATCAAAAAAGGCGCTTTAATCGGA 663
|.|||||||||.||||.||....|||||.|||||.||.|||.|..|.||.
BPUM_1262___y 614 CAAATGAAATGACCTCTGAAGCGGTGATTAAAAAGGGAGCTGTGCTTGGG 663
BSNT_02304___ 664 GGCACGATGCTGACGATTGTGCTGTCCG--GGAGTTTTCTGTCTTTGTCA 711
||||..||||||||..||.|..|.|.|| .|..||||.|.||||
BPUM_1262___y 664 GGCATCATGCTGACAGTTATTTTATTCGTATGCTTTTTATCTCTT----- 708
BSNT_02304___ 712 ACTCTTCCGGATGTATTTTT---------GTATGATATACCGATGGCGCA 752
||||| || ||..|.| ||.||||||.||.||||||||
BPUM_1262___y 709 --TCTTC---AT-TAGATATGCTAGAGGCGTTTGATATTCCAATGGCGCA 752
BSNT_02304___ 753 AGTGGTTTATCTCTTTGCACGATCTGTCCAT----TTGATTTATTTACTC 798
.||.||.||||...|.||| .|| ||||| .|.|||||||||.|.
BPUM_1262___y 753 GGTCGTGTATCAAGTAGCA-AAT---TCCATACACCTCATTTATTTATTT 798
BSNT_02304___ 799 ATTATTTTCGGAGAAGTGTTCACATCAGTTATCGGTAATCTATATGGATT 848
.|.||||||||.|||||.||.|||||.||.||.||.|||.||||||||.|
BPUM_1262___y 799 GTGATTTTCGGCGAAGTTTTTACATCTGTCATAGGCAATTTATATGGACT 848
BSNT_02304___ 849 AGAAAAACAAGTGCAAAGC-TTTCTTCCAGTGAAAAGCAAATATATCTTT 897
.||.|.||||||| |..|| |.|.|.|.|.||||.|| |.||||.
BPUM_1262___y 849 TGAGAGACAAGTG-AGGGCGTATATACGAATGAACAG------TGTCTTG 891
BSNT_02304___ 898 GC---AGCCATTATGATCAC---GGCT--TATATTACGAGCCAAATAGGG 939
.| |.||.|||| ||.| .||| |||.|.|..||..||||.||.
BPUM_1262___y 892 ACGATATCCCTTAT--TCTCTTATGCTGCTATGTGATAAGTAAAATTGGT 939
BSNT_02304___ 940 TACGGCAGGCTTATTTCAACGATTTATCCCTTGTTTGGCTATGTGAGCCT 989
|||||.|...|.||.||||||.|||||||..|.|||||||||||||||.|
BPUM_1262___y 940 TACGGTACATTGATATCAACGGTTTATCCTATTTTTGGCTATGTGAGCAT 989
BSNT_02304___ 990 GGCCTTCATAGGCGCTTTGCTTT---GCAAAAAAG---CT-CCTCGGCGG 1032
|.||..||..|.|||| |||| .|||||||| || ||||
BPUM_1262___y 990 --CTTTTTTATCCTCTTT-CTTTTTCTCAAAAAAGTGCCTGCCTC----- 1031
BSNT_02304___ 1033 CGCAGTTT--ATAA---- 1044
||| ||||
BPUM_1262___y 1032 -----TTTAGATAAGTAA 1044
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