Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02298 and BPUM_1259

See Amino acid alignment / Visit BSNT_02298 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:45
# Commandline: needle
#    -asequence dna-align/BSNT_02298___motB.1.24716.seq
#    -bsequence dna-align/BPUM_1259___motB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02298___motB-BPUM_1259___motB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02298___motB-BPUM_1259___motB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02298___motB
# 2: BPUM_1259___motB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 824
# Identity:     538/824 (65.3%)
# Similarity:   538/824 (65.3%)
# Gaps:         100/824 (12.1%)
# Score: 1611.0
# 
#
#=======================================

BSNT_02298___      1 ATGGCGAGAAAAAAGAAGAAGCATG---AGGACGAGCAAGTTGATGAATC     47
                     |||||.||.|||...||.||.||||   |.||.||.||.||.||||||||
BPUM_1259___m      1 ATGGCTAGGAAACGTAAAAAACATGATCACGATGACCATGTAGATGAATC     50

BSNT_02298___     48 ATGGCTCGTTCCTTACGCCGACATCCTTACTCTTCTCCTGGCATTGTTTA     97
                     .|||||..|.|||||.|||||..|.||.||.|||||.||.||..|.||.|
BPUM_1259___m     51 TTGGCTGATCCCTTATGCCGATCTTCTAACGCTTCTACTCGCTCTCTTCA    100

BSNT_02298___     98 TTGTGCTGTACGCGAGC-AGCTCGATTGACGCAGCTAAGTTT---CAAAT    143
                     |||||||.|..|| |.| ||.||||||||.||.||.||.|.|   ||.||
BPUM_1259___m    101 TTGTGCTTTTTGC-ATCTAGTTCGATTGATGCGGCAAAATATGAACAGAT    149

BSNT_02298___    144 -GCTCTCAAAATCATTTAATGAAGTTTTTACAGGCGGCACCGGTGTACTG    192
                      |||    ||.||.|||||||..||.|||||||||||.||.|||||..||
BPUM_1259___m    150 GGCT----AAGTCTTTTAATGTCGTCTTTACAGGCGGTACTGGTGTCATG    195

BSNT_02298___    193 GACTACTCCAGTGTCACTCCTCCTGAAAACGAGTCAGACGGCATCGATGA    242
                     ||..|.|||||          |.||.||   |||   ||        |||
BPUM_1259___m    196 GATCAATCCAG----------CATGCAA---AGT---AC--------TGA    221

BSNT_02298___    243 AG----TGAAAA-AGGAAAAAGA--AGAGAAAG-AGAAAAACAAGAAAGA    284
                     ||    |||||| ||.||..|||  | |||||| ||...||.||| |.||
BPUM_1259___m    222 AGAAACTGAAAATAGCAACCAGACCA-AGAAAGCAGCGGAAGAAG-ATGA    269

BSNT_02298___    285 AAAAGAAAAAGC---AGCT---GATCAAGAAGAACTTGAAAATGTGAAGA    328
                     |.|||..|||||   ||||   |||||.|..|..||...|||.||.||.|
BPUM_1259___m    270 AGAAGCTAAAGCGAAAGCTCGAGATCATGCTGTTCTCACAAAGGTCAAAA    319

BSNT_02298___    329 GCCAGGTGGAAAAGTTCAT--CAAAGATAA-AAAGCTGGAACATCAGCTG    375
                     ..||.|||||....|||||  |.|  |||| |||..||||.| |.||||.
BPUM_1259___m    320 AGCAAGTGGATTCCTTCATTGCTA--ATAAGAAACTTGGAGC-TAAGCTC    366

BSNT_02298___    376 GAGACGAAGATGACTAGTGAAGGCCTTCTGATTACGATTAAAGACAGCAT    425
                     ||.||.|||.||||....|||||..|.||.||||||||..|||||||.||
BPUM_1259___m    367 GAAACAAAGCTGACGGACGAAGGTTTGCTCATTACGATAGAAGACAGTAT    416

BSNT_02298___    426 CTTCTTTGATTCTGGAAAAGCGA--------CCATCCGTAAGGAAGATGT    467
                     |||||||||||||||...||| |        ||.||       |||||||
BPUM_1259___m    417 CTTCTTTGATTCTGGCCGAGC-AGTTATTCGCCCTC-------AAGATGT    458

BSNT_02298___    468 GCCGCTTGCAAAAGAGATTTCAAATCTTCTTGTGATTAACCCGCCAAGAA    517
                     .|||.|.|||||.||.||||||||.||.||.||.||||||||..|..|..
BPUM_1259___m    459 CCCGTTAGCAAAGGAAATTTCAAAACTACTCGTTATTAACCCCGCTCGTG    508

BSNT_02298___    518 ATATCATTATCAGCGGACATACTGATAATATGCCAATTAAAAATTCTGAA    567
                     |.|||.|.||.||||||||||||||||||.|.||.||.|.||||||.||.
BPUM_1259___m    509 ACATCGTCATTAGCGGACATACTGATAATGTACCGATCAGAAATTCAGAT    558

BSNT_02298___    568 TTCCAATCAAACTGGCATTTAAGCGTCATGAGAGCGGTAAACTTTATGGG    617
                     ||..||||.||.|||.|||||||.|.|||..|.||.|||||||||.||.|
BPUM_1259___m    559 TTTGAATCCAATTGGTATTTAAGTGCCATACGTGCTGTAAACTTTTTGAG    608

BSNT_02298___    618 GCTCCTGATTGAAAACCCCAAGCTCGATGCAA---AAGTG---TTCAGCG    661
                     ..|.||..||||||||..||      ||..||   |||.|   ||.||..
BPUM_1259___m    609 TATTCTTCTTGAAAACAGCA------ATTTAAACCAAGAGAACTTTAGTA    652

BSNT_02298___    662 CCAAGGGTTATGGCGAGTATAAACCGGTGGCTTCCAACAAAACTGCGGAA    711
                     |.||.||||.|||.||.|..||.|||.|.|||||.||..|.||.||.|||
BPUM_1259___m    653 CAAAAGGTTTTGGTGAATTCAAGCCGATCGCTTCAAATGACACGGCAGAA    702

BSNT_02298___    712 GGCCGAAGCAAAAACCGGCGGGTTGAAGTTCTCATTTTGCCGA--GAGGC    759
                     |||.||||.||||||||.||.||.|||||.||.|||||.||||  |||  
BPUM_1259___m    703 GGCAGAAGTAAAAACCGACGCGTAGAAGTACTGATTTTACCGATTGAG--    750

BSNT_02298___    760 GCAGCGGAAACAAATGAAAAATAG    783
                              |.|||.|.||||||.
BPUM_1259___m    751 ---------AAAAAAGCAAAATAA    765


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02298 and BPUM_1259

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
