Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02294 and BPUM_1257
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:45
# Commandline: needle
# -asequence dna-align/BSNT_02294___kinD.1.24716.seq
# -bsequence dna-align/BPUM_1257___kinD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02294___kinD-BPUM_1257___kinD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02294___kinD-BPUM_1257___kinD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02294___kinD
# 2: BPUM_1257___kinD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1601
# Identity: 1022/1601 (63.8%)
# Similarity: 1022/1601 (63.8%)
# Gaps: 193/1601 (12.1%)
# Score: 2880.5
#
#
#=======================================
BSNT_02294___ 1 TTGAAAATACTAAAAGGCGCCTGCGGGAGA--GTCAAACTTTATATCATA 48
.|||..|||||.|||| |.||..||.||| .|||..||.||..|.||.
BPUM_1257___k 1 ATGAGTATACTGAAAG--GGCTTTGGAAGAAGATCAGGCTGTACCTTATT 48
BSNT_02294___ 49 CTGGTCGTGATTCCGGCAATCGTCATCAGCTTTTTCGTATATGAAAAAGA 98
.|||||.|||||||..|..|..||||.||.|.|||..|.||.||||||||
BPUM_1257___k 49 TTGGTCATGATTCCAACCCTAATCATTAGTTATTTTATCTACGAAAAAGA 98
BSNT_02294___ 99 AAAAGATACAATAGCTGCAGAACATAAACAAGAAGCAAGTGTCCTGCTAA 148
||..||.|.|||.|.|..|.||.|.||||||...||.|...|..||.|||
BPUM_1257___k 99 AACGGAAAAAATTGATTTAAAAAACAAACAAACTGCTACACTTATGTTAA 148
BSNT_02294___ 149 ACCTTCACCGCAACAAAATCAATTATTTAATCGGAGAAACAATGGCGAGA 198
|..|||||...|||.||||.|||||||||||..|.||||||...||.|||
BPUM_1257___k 149 ATATTCACAAAAACCAAATGAATTATTTAATTAGTGAAACAGAAGCAAGA 198
BSNT_02294___ 199 ATGACCTC-CTTGTCCATCGCCATCGAC----------AGACCGGTTGAT 237
.|.||.|| |||| ||||.|...|.||| |||| ||
BPUM_1257___k 199 TTAACTTCACTTG-CCATGGGATTTGACCAGCCTCTCAAGAC-----GA- 241
BSNT_02294___ 238 ATAAAG---AAAATGCAGTCAATTTTGGAAAAGACCTTTGATTCAGAGCC 284
|.|||| |||| .||..|.||.||.|.||.|.|...|||.||
BPUM_1257___k 242 AAAAAGTACAAAA-------CATCCTAGAGAAAATCTATAAACAAGAACC 284
BSNT_02294___ 285 GAGATTTTCCGGTCTCTATTTTCT---CAATGCCAAAGGAGACGTCACCG 331
..|.|||||.|||||.|||.|.|| ||| .||||||.|.||.||.|
BPUM_1257___k 285 TCGTTTTTCAGGTCTGTATCTCCTAGACAA---AAAAGGAAATGTAACAG 331
BSNT_02294___ 332 CAAGCACAACCGAATTAAA--AACGAAAGTAAACCTGGCCGACAGATCTT 379
..|||||.||...|||||| || |||.|.|||||..|...||||..||
BPUM_1257___k 332 TTAGCACCACACCATTAAAGGAA--AAAATTAACCTATCATTCAGAGATT 379
BSNT_02294___ 380 TTTTTACAAAAGCA---AAG-GAAACTAAAAAGACAGTCATTTCAGATAG 425
..||| ||..||| ||| | ||.||..||||.||.||..||||||.
BPUM_1257___k 380 ACTTT--AAGCGCATTCAAGTG--ACCAAGCAGACGGTGATCACAGATAA 425
BSNT_02294___ 426 TTATTCGAGCAGAATTACTGGTCAGCCAATTTTCACAATTTGTGTCCCTG 475
||||..||||.|||||||....||||..|||.|..|.||||||||.||||
BPUM_1257___k 426 TTATGTGAGCCGAATTACAAAACAGCGGATTCTTTCCATTTGTGTGCCTG 475
BSNT_02294___ 476 TTTCGGACTCAAAACGTA-ATGTGACAGATTATCTTGTCGCAGCTATTCA 524
|...||| |.||||||.| |.||.||..||...||.|||||.||.|||||
BPUM_1257___k 476 TGCTGGA-TGAAAACGAAGAAGTCACCAATGTGCTAGTCGCCGCCATTCA 524
BSNT_02294___ 525 AATTGATTATTTGAAAAATCTCATTAACTTGCTGAGCCCTGATGTTTATA 574
||||||||||||.|.||||.|.||.||..|..|||.|||||||.||.||
BPUM_1257___k 525 AATTGATTATTTAAGAAATATAATGAATGTATTGAACCCTGATCTTCAT- 573
BSNT_02294___ 575 TTGAAGTTG-TGAACCAAGACGGGAAAATGATT---TTTGCGAGCGG--- 617
||..||.|| ||||.|||.|.|| |.||| || |||.|.||.||
BPUM_1257___k 574 TTTCAGATGCTGAATCAAAATGG--ACATG-TTGTGTTTACAAGTGGTCC 620
BSNT_02294___ 618 ACAAGCCTCTCATGCAGAGGATCAGAAA----------CCTGTCAGCGGA 657
||||.| ||.|||||||| ..||||..| |
BPUM_1257___k 621 ACAACC-----------AGCATCAGAAAATGGTAGCACTGTGTCTAC--A 657
BSNT_02294___ 658 TATCTGGATGATATCAGCTGGAATATGAAAGTCTATCCG-AACCCGGT-- 704
|||.|.|||||.|.|||||||||..||.|.||||||||| |.|.||.|
BPUM_1257___k 658 TATTTAGATGAAAACAGCTGGAAGCTGGAGGTCTATCCGCAGCGCGCTTC 707
BSNT_02294___ 705 CACAATAGAAGAACTGAC-GAAAAGCCTAGTGCT--TCCGCTTT---CA- 747
.|||...||||..|||.| | |..|||| ||| |||| ||
BPUM_1257___k 708 TACAGGTGAAGTGCTGTCTG-------TTATGCTGATCC-CTTTATCCAG 749
BSNT_02294___ 748 TG-TATTATTGTTCTGCTGAATATCCTTTTTATT----CTCGTGC--TGT 790
|| |.||||| ||.| |.|||| ||||||| ||.||.| |.|
BPUM_1257___k 750 TGCTTTTATT-TTAT--TAAATA----TTTTATTCACACTTGTTCAATAT 792
BSNT_02294___ 791 ATTATTTGCTGAAGCGGCAGACCCAGCTGGAGCGCTCA-GAAAACGAGGC 839
||.|||| |.|.||||||.|||||||.|||.|| ||| .||||.||.||
BPUM_1257___k 793 ATCATTT--TAAGGCGGCAAACCCAGCAGGAACG-TCACCAAAATGAAGC 839
BSNT_02294___ 840 GCAAAAATTAGAACTGATCGGGACGCTTGCTGCCAGCACAGCCCATGAAA 889
||||||..|.|||.|.|||||.||.||.||.||.||.||.||.|||||||
BPUM_1257___k 840 GCAAAAGCTTGAATTAATCGGAACCCTCGCAGCAAGTACGGCACATGAAA 889
BSNT_02294___ 890 TCCGTAACCCTCTT-ACCGGCATAAGCGGCTTTATTCAGCTGTTGCAAAA 938
|.||.||||| ||| ||.||.||.||.||.|||||.|||||.||||||||
BPUM_1257___k 890 TTCGCAACCC-CTTAACAGGGATTAGTGGTTTTATACAGCTTTTGCAAAA 938
BSNT_02294___ 939 GAAATATAAAGGTGAAGAGGATCAGCTTTACTTCTCCATTATCGAACAGG 988
|||.|||.|...||||||.||||||||.||.||.||..|.||.|||.|.|
BPUM_1257___k 939 GAAGTATCACTCTGAAGAAGATCAGCTCTATTTTTCTGTCATTGAAGAAG 988
BSNT_02294___ 989 AGATAAAGCGCATCAATCAAATAGTGAGTGAGTTTCTCGTTCTCGGCAAG 1038
|.||.||.||.||.||.|||||.||.|||||||||||.||..|.||.||.
BPUM_1257___k 989 AAATTAAACGAATTAACCAAATCGTCAGTGAGTTTCTTGTATTAGGGAAA 1038
BSNT_02294___ 1039 CCGACAGCTGAAAAATGGGAGCTGAACTCACTTCAGGACATTATCGGAGA 1088
||.|||||.|||||||||.||...|||||..|..|.||.|||.|..|.||
BPUM_1257___k 1039 CCAACAGCAGAAAAATGGCAGAATAACTCTGTAAAAGAAATTGTAAGTGA 1088
BSNT_02294___ 1089 AATTATGCCGATCATTTATTCTGAGGGCAATCTATACAATGTTGAAGTCG 1138
.||.|||||||||.|||..|||||||..||.||.||.||||||||.||.|
BPUM_1257___k 1089 GATCATGCCGATCGTTTTCTCTGAGGCGAACCTGTATAATGTTGAGGTTG 1138
BSNT_02294___ 1139 AATTGCAGTATTTAACCGAGCAGCCCTTAC---TCGTAAAATGT------ 1179
|..|||| |.|||| ||| || ||.||||
BPUM_1257___k 1139 ATCTGCA--AATTAA------------TACAATTC--AAGATGTTGGGGT 1172
BSNT_02294___ 1180 -------ACAAAAGATCATATTAAACAAGTGATTTTAAATGTAGCAAAAA 1222
|||||.|||||||||||||||||..|.||||||||.||.||.|
BPUM_1257___k 1173 CTATTGCACAAAGGATCATATTAAACAAGTTGTATTAAATGTTGCGAAGA 1222
BSNT_02294___ 1223 ATGGCCTCGAGTCAATGCCTGAAG-GAGGCAAACTAACG---ATTTCCCT 1268
| ||| ||.| |||| ||.||.||.|..|| ||||
BPUM_1257___k 1223 A----CTC--GTTA------GAAGCGATGCCAAATGGCGGTCATTT---- 1256
BSNT_02294___ 1269 GGGAGCTTTAGAT---------AAAA----AAGCCATAATCAAAGTTGTG 1305
|.||.|||.||| |||| |.|.|||.||.|||||....
BPUM_1257___k 1257 -GAAGATTTTGATTGAGGCTGAAAAAGACCATGTCATTATTAAAGTGAAA 1305
BSNT_02294___ 1306 GATAACGGTGAAGGGATTTCTCAGGAAATGCTGGATCACATCTTCCTTCC 1355
||||..||.||.||.||.....|.||||||.|..|.||.||||||||.||
BPUM_1257___k 1306 GATACAGGCGAGGGCATACAAGAAGAAATGTTAAAACATATCTTCCTCCC 1355
BSNT_02294___ 1356 CTTTGTTACTTCTAAAGAAAAAGGAACCGGGCTCGGCCTTGTTGTTTGTA 1405
.|||.||||.||.||.|||||||||||.||.||.||.|||||.||.||||
BPUM_1257___k 1356 TTTTATTACGTCGAAGGAAAAAGGAACAGGTCTTGGACTTGTCGTGTGTA 1405
BSNT_02294___ 1406 AACGGATCGTGCTGATGTACGGAGGCTCTATTCATATTGAAAGTGAAGTG 1455
||||.|||.|...||||||.||.||..|.|||.||||.||.||.||||||
BPUM_1257___k 1406 AACGAATCATTTCGATGTATGGCGGAACAATTGATATCGAGAGCGAAGTG 1455
BSNT_02294___ 1456 CGAAGAGGCACAAAGGTGACAATCACCCTCCC--CGTATC-CGCATCATA 1502
...|.|||.||||..||.|..||||..||.|| |...|| |.||.||||
BPUM_1257___k 1456 AATAAAGGAACAACTGTCATGATCATGCTTCCTTCTGCTCACTCAGCATA 1505
BSNT_02294___ 1503 G 1503
|
BPUM_1257___k 1506 G 1506
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