Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02289 and BPUM_1254
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:45
# Commandline: needle
# -asequence dna-align/BSNT_02289___mtnB.1.24716.seq
# -bsequence dna-align/BPUM_1254___mtnB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02289___mtnB-BPUM_1254___mtnB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02289___mtnB-BPUM_1254___mtnB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02289___mtnB
# 2: BPUM_1254___mtnB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 668
# Identity: 453/668 (67.8%)
# Similarity: 453/668 (67.8%)
# Gaps: 67/668 (10.0%)
# Score: 1478.0
#
#
#=======================================
BSNT_02289___ 1 ATGGCTG--CAAAACAAGAA-CGCTGGCGAGAGCTCGCTGAAGTAAAACG 47
|||||.| .||||.||.|| |||||||..|||||.||.||.||.|||||
BPUM_1254___m 1 ATGGCAGACGAAAAGAACAAGCGCTGGCAGGAGCTAGCAGACGTCAAACG 50
BSNT_02289___ 48 GGAATTGGCAGAGAGAGATTGG-TTTCCGGCGACTAGCGGTAATCTGTCA 96
.|||.|||||.|.|||||.||| |||.||| .||.|||||.|||.|.||.
BPUM_1254___m 51 TGAACTGGCACAAAGAGACTGGTTTTACGG-AACAAGCGGCAATTTATCG 99
BSNT_02289___ 97 ATTAAGGTTACAGATGAGCCTTTAACATTTCTCGTCACTGCAAGCGGAAA 146
||||||||..|.|||||.||..|.||.|||.|.||.||.||||||||.||
BPUM_1254___m 100 ATTAAGGTGTCGGATGATCCAATCACGTTTTTGGTGACGGCAAGCGGCAA 149
BSNT_02289___ 147 AGATAAACGTAAAGAGACGGTTGAAGATTTTCTGCTGGTCGATCAAAACG 196
|||||||||.|||||.||.|.||||||.|||.|..|.|| |||.|
BPUM_1254___m 150 AGATAAACGAAAAGAAACAGATGAAGACTTTGTTTTAGT------AAATG 193
BSNT_02289___ 197 GAG------AGCCTGCTGAAAGCGGGCATTCT---------CTGAAACCG 231
.|| |.||||.|| ||.|| ||.|.|||.
BPUM_1254___m 194 CAGCAGGTAACCCTGTTG---------ATCCTGACGTACCGCTTAGACCA 234
BSNT_02289___ 232 TCAGCAGAAACGCTTTTGCATACACATTTGTACAATAAAACCAATGCCGG 281
|||||.|||||.|...|.||.|||.||.||||..|....||.|||||.||
BPUM_1254___m 235 TCAGCTGAAACACAACTTCACACATATGTGTATGAGCGGACGAATGCAGG 284
BSNT_02289___ 282 ATGCTGCCTGCATGTCCATACGGTAAACAATAATGTGATTTCAGAGTTAT 331
.|||||.||.|||||||||||..|..|||||||||||||.||.|||.|.|
BPUM_1254___m 285 CTGCTGTCTCCATGTCCATACTATCGACAATAATGTGATCTCTGAGCTGT 334
BSNT_02289___ 332 ACGGAGACCAAAAG---AAAATGACATTCAAAGGCCAGGAAATTATAAAA 378
|.||.| |.||| .|.||....||||||||..|.|||||.||.|||
BPUM_1254___m 335 ATGGGG---ATAAGGGCGAGATTCGTTTCAAAGGAAACGAAATCATCAAA 381
BSNT_02289___ 379 GCACTCGGCTTGTGGGAAGAGAACGCAGAAGTGACCGTT-CCGATTATAG 427
||.||.||.|..|||||||||.|.||||||||| .|||| ||||||||.|
BPUM_1254___m 382 GCGCTTGGTTACTGGGAAGAGGATGCAGAAGTG-TCGTTACCGATTATTG 430
BSNT_02289___ 428 AAAATGCGGCACATATCCCGACGCTAGCGGCACTGTTTG----------- 466
|||||.|.||.|||||.|||...||.||.||||..||||
BPUM_1254___m 431 AAAATCCAGCCCATATTCCGCATCTTGCAGCACAATTTGCAAAGCATCTC 480
BSNT_02289___ 467 -CGGAAGAGATTTCAGAAGATTCAGGAGCTGTTCTGATCCGAAATCATGG 515
|.|||||| ||.||| |||||.|||||.||.||.||||||||.||
BPUM_1254___m 481 ACTGAAGAG---TCGGAA---TCAGGTGCTGTGCTCATTCGAAATCACGG 524
BSNT_02289___ 516 TATTACGGCTTGGGGGAAAACAGCATTTGAGGCAAAAAGAGTGCTTGAAG 565
.||.||.|..|||||.|||||.||.|.|||.||||||.||||..|.||.|
BPUM_1254___m 525 CATCACAGTCTGGGGAAAAACTGCCTCTGAAGCAAAACGAGTATTAGAGG 574
BSNT_02289___ 566 CGTATGAATTTTTGTTCAGCTACCATTTGAAATTGAAAACACT---CCAG 612
||||||||||||||||.||||||.|.||.||||| |||.|| .||.
BPUM_1254___m 575 CGTATGAATTTTTGTTTAGCTACTACTTAAAATT---AACGCTTTATCAA 621
BSNT_02289___ 613 CATCAGCTGGTTAAATAA 630
.|.|||||.||.|.||||
BPUM_1254___m 622 AAGCAGCTTGTCACATAA 639
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