Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02279 and BPUM_1248
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:44
# Commandline: needle
# -asequence dna-align/BSNT_02279___ogt.1.24716.seq
# -bsequence dna-align/BPUM_1248___ogt.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02279___ogt-BPUM_1248___ogt.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02279___ogt-BPUM_1248___ogt.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02279___ogt
# 2: BPUM_1248___ogt
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 555
# Identity: 304/555 (54.8%)
# Similarity: 304/555 (54.8%)
# Gaps: 120/555 (21.6%)
# Score: 776.5
#
#
#=======================================
BSNT_02279___ 1 -----------------------ATGAACT-----ACTATAC------GA 16
|..||.| ||||||| ||
BPUM_1248___o 1 GTGTATTATACCGTCTATCACGCACCAATTGGGGCACTATACATACTAGA 50
BSNT_02279___ 17 CAGCCGAGACGCCGC--TCGGTGAACTTATCATTGCCGAAGAGGAGGACC 64
.| .|||||..|| ||..||||.|.||..|||..||.||| ||
BPUM_1248___o 51 AA---AAGACGATGCCATCATTGAAGTGATGTTTGATGATGAG-----CC 92
BSNT_02279___ 65 GGATCACTCGTCTATTTCTCAGTCAGGAAGATTGGGTGGATTGGAAAGAA 114
| ||| |.||.|| .||||.|
BPUM_1248___o 93 G-------------TTT-----TTAGCAA--------------AAAAGCA 110
BSNT_02279___ 115 ACGGTTCAGAATACTGAGCACAAGGAAACACCTAATCTTGC-AGAAGCGA 163
|...|.||.|.|| .|..|.||.|||||..|| .|.||.| ||||||||
BPUM_1248___o 111 AGCATCCAAACTA--AAAGAAAAAGAAACGTCT-GTATTACAAGAAGCGA 157
BSNT_02279___ 164 AACAACAGCTTCAAGAATATTTCGCAGGCGAAAGG---------AAGACA 204
||.|||||||..|.||||||||| |||| ||| .|
BPUM_1248___o 158 AAAAACAGCTAGATGAATATTTC--------AAGGGTGAGCGACAAG-TA 198
BSNT_02279___ 205 TTCTCCCTGCCGCTCAGCCAAAAGGGCACTCCTTTTCAGCAAAAAGTGTG 254
|||...||.|||||||..||||.|||.|||...|||||..|..||||.||
BPUM_1248___o 199 TTCGATCTCCCGCTCAAGCAAACGGGAACTTTGTTTCAAGAGCAAGTATG 248
BSNT_02279___ 255 GCAGGC-------GCTGGAGAGGATTCCATATGGCGAATCCCGAAGCTAT 297
|.|.|| ||| |||||.|||||.|||||...|||.|||
BPUM_1248___o 249 GGAAGCACTTTCGGCT-------ATTCCGTATGGTGAATCAAAAAGTTAT 291
BSNT_02279___ 298 GCGGATATTGCCGCTGCGGTCGGCAGTCCGAAAGCGGTGCGCGCTGTCGG 347
|..||||||||.|...||.|.||.|..||.||.||.|||.|.||..|.||
BPUM_1248___o 292 GGAGATATTGCAGAAACGATTGGTAACCCAAAGGCAGTGAGAGCGATTGG 341
BSNT_02279___ 348 GCAGGCTAATAAACGTAACG----ACCTGCCGATTTTTGTCCCGTGCCAC 393
.||.||.||.|.|||.||.| |||| ||||||.|.|||||.|||
BPUM_1248___o 342 ACAAGCCAACAGACGCAATGCAATACCT----ATTTTTATTCCGTGTCAC 387
BSNT_02279___ 394 AGAGTGATCGGCAAAAACAGTGCGTTAACAGGATACGCCGGAAGCAAAAC 443
||||||||.||.|||.||.|..|..|.||.||.||.||.||||..||.||
BPUM_1248___o 388 AGAGTGATTGGAAAAGACCGATCTCTGACGGGCTATGCAGGAACGAAGAC 437
BSNT_02279___ 444 GGAGATCAAAGCATTTTTGCTAAACATCGAGCGAATCTCCTATAAAGAAA 493
.||.||.|||||..||.||||..|..|.||..|.|||.|.|.|....|||
BPUM_1248___o 438 AGATATGAAAGCGATTCTGCTTGAATTAGAAGGTATCCCATTTGTTCAAA 487
BSNT_02279___ 494 AATAA 498
|||||
BPUM_1248___o 488 AATAA 492
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