Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02277 and BPUM_1247
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:44
# Commandline: needle
# -asequence dna-align/BSNT_02277___kinE.1.24716.seq
# -bsequence dna-align/BPUM_1247___kinE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02277___kinE-BPUM_1247___kinE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02277___kinE-BPUM_1247___kinE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02277___kinE
# 2: BPUM_1247___kinE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2337
# Identity: 1565/2337 (67.0%)
# Similarity: 1565/2337 (67.0%)
# Gaps: 261/2337 (11.2%)
# Score: 4968.0
#
#
#=======================================
BSNT_02277___ 1 ATG---GAAACTCTTGGTGTC-CAGACAAACTCGGAGCTGCGAGAGGAAC 46
||| |||||.||.|.||.| ||||..|..||.||
BPUM_1247___k 1 ATGACTGAAACGCTCGATGGCGCAGAAGATATCAGA-------------- 36
BSNT_02277___ 47 TGAATCGCCTCAAAGAAGAAAACGCG--CGACT------GAAAAAGGAAT 88
|||..||||||.|.| |||.| |||.| ||.|
BPUM_1247___k 37 -----------AAATTAGAAAAAGAGAACGAATATTTGCGAACA--GAGT 73
BSNT_02277___ 89 TGAATCAGCATCAAGTGATTGTCAACAATACGCTCGATGCTATTTTTATT 138
|||..|||||..||.||.|..|.||.||.|||.|.|||||.|||||.||.
BPUM_1247___k 74 TGATGCAGCAAAAAATGCTGTTAAATAAGACGTTAGATGCCATTTTCATA 123
BSNT_02277___ 139 TGTGATAA----CGAAATGCGGATTGTTCAGGCAAATGAAGCAACAGAAA 184
|.|||||| |..||| |||.|.||.||.||||||||.|||...|
BPUM_1247___k 124 TTTGATAAACACCTCAAT----ATTATCCAAGCCAATGAAGCGACATGCA 169
BSNT_02277___ 185 GGATGCTTCAAGTTGAC-TCGGAAGA-------TTTGAAAAAGCGTTCTG 226
||.|..|.|| ||| |||.|||| .|..|.||| ||.|
BPUM_1247___k 170 GGCTTGTACA----GACATCGAAAGAAGACCTCCTCAATAAA----TCCG 211
BSNT_02277___ 227 TTTTGGATTTTTTGTTTTCA----ATCCC-AAAGGATGAACTGAATCTTT 271
||.|.|||||..|.| | ||||| ||||....||.|||||..|.
BPUM_1247___k 212 TTCTAGATTTCCTAT----ACGGCATCCCGAAAGACAAAATTGAATGCTC 257
BSNT_02277___ 272 CCGTAAAGAAGTTTTTTAAAAAAGG--CTTTCTGTGGAAGGAG-----GT 314
||.|.|...| ||||||..|||||| |.|| |||.|| .|
BPUM_1247___k 258 CCTTGATTTA-TTTTTTCGAAAAGGAACGTT------AAGAAGAGAAATT 300
BSNT_02277___ 315 TCCGATCAGGCTTGATTGCGGGGCAACAAAATACATAGAGTTTCTGGCCA 364
|||..||| ||||||...|||.|.|||||||||.||.||.|||.|.||
BPUM_1247___k 301 TCCATTCA-GCTTGAAAACGGAGAAACAAAATATATTGAATTTGTCGC-- 347
BSNT_02277___ 365 AAAGAGGCATTGGTGAGGATTTCTT------------TTTTGTTGTCATG 402
||| |||| ||..|||| |.||||.||||||
BPUM_1247___k 348 --AGA-GCAT-------GACGTCTTGAATCAGCAATATATTGTGGTCATG 387
BSNT_02277___ 403 AGGGACATATCTTCTAAGAAGATTCTGGAGCGGGAATTCTCTATGAATGA 452
.|.||.||.||.||.|||||.||.||.||.||.|||...||.||||||||
BPUM_1247___k 388 CGAGATATTTCCTCAAAGAAAATACTAGAACGAGAACGATCGATGAATGA 437
BSNT_02277___ 453 ACAGCTTTTTAAGGACTTGTTTGACAGAGCAGTTGACGGAATCGTCCTGT 502
.|||||.||.||.||.|||||||||.||||..|||||||.||.|||.|.|
BPUM_1247___k 438 GCAGCTGTTCAAAGATTTGTTTGACCGAGCCATTGACGGCATGGTCATTT 487
BSNT_02277___ 503 TTGATAAAGATGGCGGTTTTATTGATGCCAATTTGTCCTTTTGTAAAAGC 552
|||||.|.||||||.|..|.||.||.||||||...||.||||||.|.|||
BPUM_1247___k 488 TTGATCAGGATGGCTGCATGATCGACGCCAATCATTCTTTTTGTCAGAGC 537
BSNT_02277___ 553 TTTGAAAT-CAATCATAATGAGCTGTCTCATTTA---------TCTTTGT 592
||||||.| ||| || |.||.||||| |.|||..
BPUM_1247___k 538 TTTGAACTGCAA----AA------GACTGATTTAACCGATCGTTATTTAA 577
BSNT_02277___ 593 ATGAGTTCATAGACAGCGGCTCACGAAAAGATTTC-----GACAATATCT 637
||||.||..|.|| || |.|||||..||.| .|||..|.||
BPUM_1247___k 578 ATGAATTTGTCGA-AG------ATGAAAATCTTCCAGCCTTACAGCACCT 620
BSNT_02277___ 638 GGAAGGCGCTCAACCGCA-------AG---GGAAAAGCGAAGGGGGAGCT 677
.|.|||..|| || ||.|||||.|||||.|||||
BPUM_1247___k 621 --------TTTAACATCACTTAAAGAGACTGGGAAAGCCAAGGGAGAGCT 662
BSNT_02277___ 678 GCCTGTCAAGCTTCGTTCAGG--AGTTCAAAAACTATTTGAATTCACGAT 725
.||.||.|..||||..||.|| ||| |.|||.||||.||..||||.||
BPUM_1247___k 663 TCCCGTTACCCTTCAATCTGGCCAGT--ACAAATTATTCGAGCTCACCAT 710
BSNT_02277___ 726 TACATCAAACATCATCAGCGGTTTTTATATGTCCATTATGAGGGATATCA 775
|||||||||..|.||.||||||||||||||||||||.|||.|||||||.|
BPUM_1247___k 711 TACATCAAATGTGATGAGCGGTTTTTATATGTCCATCATGCGGGATATTA 760
BSNT_02277___ 776 CAGAGAAGCGGTCTATGGAGCTGCAGCTCTTTAAAAGTGAGGAGCGCTTC 825
||||.||..|||..|||||.....||||.||.|||||||||||.|||||.
BPUM_1247___k 761 CAGAAAAAAGGTTAATGGAAGAAAAGCTGTTAAAAAGTGAGGAACGCTTT 810
BSNT_02277___ 826 AGAGAAATCTTTGAAAATGCAATGGACGCCATCATCATCTGGTCGAATGA 875
||||||||.|||||||||||||||||.||.||||||||.|||.||.||||
BPUM_1247___k 811 AGAGAAATTTTTGAAAATGCAATGGATGCAATCATCATATGGGCGGATGA 860
BSNT_02277___ 876 CGGAAGA-ATCGTAAAAGCGAATCAATCAGCCTGTAAAATTTTTGAGCTG 924
.|| ||| ||.||.|.|||.|||.||||||||||....||||||||..||
BPUM_1247___k 861 TGG-AGAGATTGTCAGAGCAAATGAATCAGCCTGCCGCATTTTTGAATTG 909
BSNT_02277___ 925 CCGATGAATTTGCTG-TTGAAAAGAAAGCTGTGTGATTTTCTCGTTGACT 973
||.|||.|||..||| |||..|| |||.||....||.||||||||..|.|
BPUM_1247___k 910 CCTATGCATTCACTGATTGGCAA-AAAACTCACAGACTTTCTCGTGAAAT 958
BSNT_02277___ 974 CGCAGCAGAAATACAGCATAACGA--AGAGGAAATACGCAAAATA--CGG 1019
|..|.||||.|||.|| |.||| ||| |.||.|.||| |||
BPUM_1247___k 959 CTGATCAGAGATATAG---ACCGACTAGA------AGGCGATATATTCGG 999
BSNT_02277___ 1020 A-----GAGATCAGAGAAGAGCTGCTGTTTCA-AATGGGGAACGGGCAAT 1063
| ||.||.||.||||||||..|| |||| |||||.|||.|||||.|
BPUM_1247___k 1000 AATCATGAAATAAGGGAAGAGCTTTTG-TTCAGAATGGCGAATGGGCAGT 1048
BSNT_02277___ 1064 TCAAAGAGCTTGAATTTACTTCAAAACGGACAATCC-----TTGAAAATC 1108
|.|||||||||||.|||||.|||||.| ||.| |.|||...|
BPUM_1247___k 1049 TTAAAGAGCTTGAGTTTACATCAAAGC-----ATGCGGTATTAGAAGGAC 1093
BSNT_02277___ 1109 AGCATTTGACGATCTTAAGAAATGTAAGCGACAGAAAGCGGATGGAAAAG 1158
|||||||.||.||.|||.|.|||||.||.||..||||..|||||||..||
BPUM_1247___k 1094 AGCATTTAACCATTTTACGTAATGTGAGTGATCGAAAAAGGATGGAGGAG 1143
BSNT_02277___ 1159 GAGCTTCGGGAAAGCGAGCTGAAATTCAGAAAAGTGTTCAACGGCTCAAT 1208
|||||.||||||||.|||||.||||||.|.|||||.||.||.||.|||||
BPUM_1247___k 1144 GAGCTGCGGGAAAGTGAGCTCAAATTCCGTAAAGTATTTAATGGATCAAT 1193
BSNT_02277___ 1209 GGACGGCAATGTGTTGTTCGACAATCAATACAGGATCATTGACGCCAACC 1258
||||||||.|||..|.||.||.||.||||||.|.||.||.||.|.|||.|
BPUM_1247___k 1194 GGACGGCATTGTTCTTTTTGATAACCAATACCGCATTATCGAAGTCAATC 1243
BSNT_02277___ 1259 CGTTAGCAAGCCATATTTTGGGCCTGTCACATGAAGA-GATCA---AACA 1304
|.|..||||||.|..|..|.|| ||.| .|||| ||||| |||.
BPUM_1247___k 1244 CCTCCGCAAGCGAGCTGCTCGG---GTTA---AAAGATGATCATTTAACG 1287
BSNT_02277___ 1305 GCA--CAGCCTGTTAGATATTATTTCTGCTTATGAAATAGAAAATCTGGC 1352
|.| .|..||.||..||||..||.|..|||||.||.|.|||.||.||||
BPUM_1247___k 1288 GAAATGAATCTTTTCCATATCCTTGCGCCTTATCAAGTTGAACATTTGGC 1337
BSNT_02277___ 1353 ATCA--CCGGCAAGGCAGAT-TAATTTTGATGAAATGGACAACGAAATTC 1399
| || |.|.|.|||| ||| |.| ||.||||||||||||||.|||.|.|
BPUM_1247___k 1338 A-CAGCCTGCCCAGGC-GATGTCA-TTAGATGAAATGGACAATGAAGTGC 1384
BSNT_02277___ 1400 CATTTTTGCT----------GAGCAGCGGTGATAACAGAAAACTCGAATT 1439
|.|||.|||| ||.|||||| |.|.|.|||||
BPUM_1247___k 1385 CGTTTGTGCTGAACCACCCAGATCAGCGG----------ATATTAGAATT 1424
BSNT_02277___ 1440 CTCATTTAAACGGAATATTATTCAAAATATGAACTTGGCTATCTTTAAAG 1489
|||.||||||||.||.||.|||||.||||||||.|||||.|||||||.||
BPUM_1247___k 1425 CTCTTTTAAACGCAACATCATTCATAATATGAATTTGGCGATCTTTAGAG 1474
BSNT_02277___ 1490 ACGTAACAGAGCGAAAAGAATTGGAGGAACGCCTGCGCAAATCAGATACC 1539
|.||.||||||||.||.|||||.||.||.|||.||.|.||||||||||||
BPUM_1247___k 1475 ATGTGACAGAGCGGAAGGAATTAGAAGAGCGCGTGAGAAAATCAGATACC 1524
BSNT_02277___ 1540 CTTCATGTTGTCGGCGAACTCGCAGCCGGCATTGCTCATGAAATCAGAAA 1589
||||||||.|||||.||.||.||.||.||||||||.||||||||||||||
BPUM_1247___k 1525 CTTCATGTGGTCGGAGAGCTTGCCGCTGGCATTGCGCATGAAATCAGAAA 1574
BSNT_02277___ 1590 TCCGATGACTGCTCTTAAAGGCTTCATTCAGCTTCTGAAAGGGAGTGTCG 1639
.||.|||||.||..|.||||||||.|||||.||..|.|||||.|.|.|.|
BPUM_1247___k 1575 CCCAATGACAGCATTAAAAGGCTTTATTCAACTGTTAAAAGGAAATATAG 1624
BSNT_02277___ 1640 AGGGAGACTACGCCCTTTACTTCAACGTGATCACCTCAGAACTAAAGCGC 1689
|.||.||.||..|||||||.||.||.||||||||.|||||.||.||..|.
BPUM_1247___k 1625 AAGGGGAGTATTCCCTTTATTTTAATGTGATCACTTCAGAGCTGAAAAGA 1674
BSNT_02277___ 1690 ATCGAATCCATCATCACCGAATTCTTGATTTTAGCCAAGCCCCAGGCCAT 1739
||.|||||.||||||||||||||.|||||||||||.|||||.||.|||||
BPUM_1247___k 1675 ATTGAATCGATCATCACCGAATTTTTGATTTTAGCGAAGCCGCAAGCCAT 1724
BSNT_02277___ 1740 TATGTATGAGGAAAAACATGTTACCCAAATTATGAGGGACACGATAGACC 1789
..|.|||||.||||||.|.||....||||||.|||..||||||||.||.|
BPUM_1247___k 1725 CGTATATGAAGAAAAAAACGTGGTGCAAATTGTGAAAGACACGATGGATC 1774
BSNT_02277___ 1790 TTCTAAATGCGCAAGCCAATCTCAGCAATGTACAAATGCAACTTGATTTA 1839
|.||..|.||.||.||.||.||..||||.||.||||||||.||..||.|.
BPUM_1247___k 1775 TGCTGCACGCACAGGCGAACCTTGGCAACGTTCAAATGCATCTCAATGTG 1824
BSNT_02277___ 1840 ATTGACGACATTCCCCCGATTTACTGTGAACCGAATCAGCTGAAACAGGT 1889
||.||.||.||.||.|..|||||.||.||||..|||||..|.|||||.||
BPUM_1247___k 1825 ATGGATGAGATACCGCTCATTTATTGCGAACAAAATCAATTAAAACAAGT 1874
BSNT_02277___ 1890 TTTTATCAATATATTAAAAAACGCCATCGAAGTGATGCCTGACGG---CG 1936
.|||||.||.||..|||||||.||.||.|||||.||||| || | .|
BPUM_1247___k 1875 CTTTATTAACATTCTAAAAAATGCAATTGAAGTCATGCC-GA--GAAAAG 1921
BSNT_02277___ 1937 GAAATATTTTTGTAACGAT--AAAGGCATTGGATCAAGATCATGTTCTTA 1984
|||||.|.|.|||.||.|| |.|||.| ||...||||.|||.|..|||
BPUM_1247___k 1922 GAAATGTCTATGTGACCATTCAGAGGAA--GGGCGAAGAGCATATAGTTA 1969
BSNT_02277___ 1985 TCTCCTTAAAAGACGAGGGAATCGGAATGACAGAAGATAAATTAAAGCGC 2034
|.||..|....||.||.||...|||||||.||||.||.||..|.|.|||.
BPUM_1247___k 1970 TATCACTGCGGGATGAAGGCTGCGGAATGGCAGAGGACAAGCTGAGGCGT 2019
BSNT_02277___ 2035 CTTGGTGAACCGTTTTATACGACAAAGGAACGGGGAACTGGACTTGGGCT 2084
||.||.|||||.||||||||||||||.|||.|.|||||||||||| ||||
BPUM_1247___k 2020 CTAGGAGAACCATTTTATACGACAAAAGAAAGAGGAACTGGACTT-GGCT 2068
BSNT_02277___ 2085 T-ATGGTAAGCTATAAAATTATTGAAGAACATCAAGGCGAA--ATTATGG 2131
| |||||.||.|||||||||||||||||.||.|||| ||| |||..||
BPUM_1247___k 2069 TAATGGTTAGTTATAAAATTATTGAAGAGCACCAAG--GAACCATTGAGG 2116
BSNT_02277___ 2132 TAGAAAGTGAAGAAGGGAAGGGCACCGTTTTCCATATTACGCTTCCTGTC 2181
||||||||||.||||||...||.|||||.||||||.|.|||||.||..|.
BPUM_1247___k 2117 TAGAAAGTGAGGAAGGGGTAGGAACCGTCTTCCATCTCACGCTGCCACTT 2166
BSNT_02277___ 2182 AGACAGAATGCTGAAGAAAGAAGGA-ATGATGAATGA 2217
|||||||| |||..|||||||| |..||.||
BPUM_1247___k 2167 AGACAGAA----GAAACAAGAAGGAGAGCATTAA--- 2196
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