Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02269 and BPUM_1241

See Amino acid alignment / Visit BSNT_02269 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:43
# Commandline: needle
#    -asequence dna-align/BSNT_02269___htpX.1.24716.seq
#    -bsequence dna-align/BPUM_1241___htpX.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02269___htpX-BPUM_1241___htpX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02269___htpX-BPUM_1241___htpX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02269___htpX
# 2: BPUM_1241___htpX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 921
# Identity:     645/921 (70.0%)
# Similarity:   645/921 (70.0%)
# Gaps:          45/921 ( 4.9%)
# Score: 2126.5
# 
#
#=======================================

BSNT_02269___      1 ATGGCGAAAAGAATTTTTCTGTTTATTCTAACGAATATTTTGGTGCTTAC     50
                     ||||..||||||||.|||||||||||..|||||||.|||.|.||..|.||
BPUM_1241___h      1 ATGGGTAAAAGAATATTTCTGTTTATATTAACGAACATTCTTGTTATCAC     50

BSNT_02269___     51 AACAATCGGGATCGTTTTGTCTGTTTTAAGCTCTGTTACAGGAGTCGGGA    100
                     .||.||.||.||.||..|.||.|||.|.||..|.|..||.||.||.|   
BPUM_1241___h     51 TACGATTGGTATTGTACTATCGGTTATTAGTGCAGCAACTGGTGTTG---     97

BSNT_02269___    101 CGTACTT-TACAGCTGATGGCGGTATCGATCCAA---------TGGCGCT    140
                      ||.||| ||.||..|..|.|||||      .||         ||||.||
BPUM_1241___h     98 -GTTCTTATATAGGAGCAGACGGTA------GAATTAGTATGGTGGCACT    140

BSNT_02269___    141 TCTTGTGTTCAGTTTAGTCGTTGGGTTTGTCGGTTCCTTTACGTCTCTTG    190
                     ..|.||.||||||..|||.||.||.|||||.||.||.||.|.|||.||||
BPUM_1241___h    141 GTTAGTATTCAGTGCAGTTGTCGGTTTTGTTGGCTCGTTCATGTCACTTG    190

BSNT_02269___    191 CGATGTCCAGATGGATGGCAAAGACGATGATGGGCGTCAGAGTGCTGAAT    240
                     |||||||..|.|||||||||||.|.|||||||||.||..|.|||.||||.
BPUM_1241___h    191 CGATGTCTCGCTGGATGGCAAAAATGATGATGGGTGTACGTGTGTTGAAC    240

BSNT_02269___    241 CCGAAAAAACACTCGCTCAGC-TATGAGGAACAGCAATTGGTTGATCGTG    289
                     ||..||||..|.|| ||.|.| |||||.||.|||||..|.||.||.||||
BPUM_1241___h    241 CCTGAAAAGGATTC-CTTAACATATGATGAGCAGCAGCTTGTCGACCGTG    289

BSNT_02269___    290 TTCACAGATTA-----AGCCGCTCTGCCGGTTTAACGAAAATGCCGGAAG    334
                     |.||||||.||     ||     |.||.|||.|..|.||||||||.||.|
BPUM_1241___h    290 TGCACAGACTATCAAGAG-----CAGCAGGTCTTTCTAAAATGCCTGAGG    334

BSNT_02269___    335 TCGGGATTTACCGTTCACCTGAAGTAAACGCGTTTGCGACTGGACCGTCA    384
                     |.||.|||||.|..|||.||||||||||.||.||||||||.||.||.||.
BPUM_1241___h    335 TTGGTATTTATCAATCATCTGAAGTAAATGCTTTTGCGACAGGTCCTTCT    384

BSNT_02269___    385 AAACGCCGTTCACTTGTCGCAGTATCGTCAGGGCTGCTGGAGCAGATGGA    434
                     ||..|..|.||||||||.||.||.||..|.||..||||..|..|.|||||
BPUM_1241___h    385 AAGAGAAGATCACTTGTTGCGGTTTCCACTGGATTGCTTCATGAAATGGA    434

BSNT_02269___    435 TGACGCAGCGGTTGAAGGTGTGCTTGCCCACGAGGTCGCGCATATCACAA    484
                     |||.|||||.|||||||||||..|.||.|||||.||.||.||..|..|.|
BPUM_1241___h    435 TGATGCAGCAGTTGAAGGTGTCATCGCTCACGAAGTTGCTCACGTTGCGA    484

BSNT_02269___    485 ATGGTGATATGGTAACAATGACGCTTTTACAAGGTATCGTTAATACCTTT    534
                     |.||.||.|||||.|||||||||||..|.|||||.|||||.||.||.||.
BPUM_1241___h    485 ACGGAGACATGGTGACAATGACGCTGCTTCAAGGGATCGTCAACACGTTC    534

BSNT_02269___    535 GTCGTCTTTTTATCGCGTATCGCCGCTTGGATAGCAAGCCGTTTTGT---    581
                     ||.|||||..|.||..|.||.||.||.|||||.|||||.||.|||||   
BPUM_1241___h    535 GTTGTCTTCCTTTCAAGAATTGCGGCATGGATCGCAAGTCGCTTTGTTTC    584

BSNT_02269___    582 -CAAAGAAGATCTAGCGCCGATCGTTCATTTTATTGCAATGATTATTTTT    630
                      | ..|||||.||.|.||||||.|||||||||||||||.|||||.||||.
BPUM_1241___h    585 GC-GTGAAGAGCTTGTGCCGATTGTTCATTTTATTGCAGTGATTGTTTTC    633

BSNT_02269___    631 CAGATTGTCTTTTCGATACTTGGCAGCCTGGTTGTGTTTGCGTATTCACG    680
                     ||.||..|.||.||..|.||.||.|||||.||.||||||||.|||||..|
BPUM_1241___h    634 CAAATCATTTTCTCTGTTCTAGGAAGCCTTGTCGTGTTTGCATATTCTAG    683

BSNT_02269___    681 CCATCGTGAATTCCATGCTGACAGGGGAGGAGCGGATCTTGCCGGCAAGG    730
                     .|||||||||||||||||.|||.|.||.|||||.||.|||||.||.||.|
BPUM_1241___h    684 ACATCGTGAATTCCATGCAGACCGCGGGGGAGCTGACCTTGCGGGTAAAG    733

BSNT_02269___    731 ACAAGATGATTCATGCGCTGCGGACGCTTAAAAGC-TATTCTTCCCGGAT    779
                     |.||||||.|||||||.||.||..||||| .|.|| |||.|.||.||.||
BPUM_1241___h    734 ATAAGATGGTTCATGCACTTCGCTCGCTT-GAGGCGTATACGTCACGAAT    782

BSNT_02269___    780 TATGGAAGACGATCAGACAGCTGTCCAAACG-TTAAAGATTAATGGCAA-    827
                     ||..||.||.|||||.|||||.||....||| ||||| ||||.|||.|| 
BPUM_1241___h    783 TAAAGATGATGATCAAACAGCAGTTGCTACGCTTAAA-ATTAGTGGTAAA    831

BSNT_02269___    828 -GAAGCGCTCTTCGCTTTTCTCTACTCACCCTGATTTAGATGAGCGAATC    876
                      |||..|  ||||.||||||||.||.||||||||||||.|.||..||||.
BPUM_1241___h    832 CGAAAAG--CTTCTCTTTTCTCAACACACCCTGATTTAAACGAAAGAATT    879

BSNT_02269___    877 AGGCGGCTGGAAGCTAAATAA    897
                     ||..|.||.|||||.||||||
BPUM_1241___h    880 AGAAGACTAGAAGCAAAATAA    900


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02269 and BPUM_1241

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
