Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02240 and BPUM_1231
See
Amino acid alignment /
Visit
BSNT_02240 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:42
# Commandline: needle
# -asequence dna-align/BSNT_02240___ykzB.1.24716.seq
# -bsequence dna-align/BPUM_1231___ykzB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02240___ykzB-BPUM_1231___ykzB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02240___ykzB-BPUM_1231___ykzB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02240___ykzB
# 2: BPUM_1231___ykzB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 177
# Identity: 110/177 (62.1%)
# Similarity: 110/177 (62.1%)
# Gaps: 39/177 (22.0%)
# Score: 315.5
#
#
#=======================================
BSNT_02240___ 1 ---ATGGAGGAAGAAAAAGCGG----TCTCACTGGCAAAAGAAATTATAG 43
|||| ||.|||.||.| |||...|||||||||||||.||.|
BPUM_1231___y 1 ATGATGG----AGCAAACGCAGATCATCTGTATGGCAAAAGAAATCATCG 46
BSNT_02240___ 44 AGTTGGATATCAAGCGTGATGAAATGCTGGAGACG-TTTATGCAGCTTGC 92
..||.|||||.||..|.||||||.|.|||||| || ||.||||||...||
BPUM_1231___y 47 CATTAGATATAAAAAGGGATGAATTACTGGAG-CGATTCATGCAGGCGGC 95
BSNT_02240___ 93 CGG--AGA----ACAGGCTTTTCAATTATTAAGATCGGTTCAAAACGGAC 136
.|| ||| |||.|||.||| |||||.|.||.|||||||
BPUM_1231___y 96 AGGTCAGAATGCACATGCTCTTC------TAAGAGCCGTACAAAACG--- 136
BSNT_02240___ 137 A-----ATACCGAAAA--TCTTCGTAA 156
| || |||| |||||.|||
BPUM_1231___y 137 ATTTGTAT----AAAAGGTCTTCATAA 159
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.