Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00761 and BPUM_1228
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:32
# Commandline: needle
# -asequence dna-align/BSNT_00761___ydbB.1.24716.seq
# -bsequence dna-align/BPUM_1228.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00761___ydbB-BPUM_1228.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00761___ydbB-BPUM_1228.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00761___ydbB
# 2: BPUM_1228
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 448
# Identity: 207/448 (46.2%)
# Similarity: 207/448 (46.2%)
# Gaps: 182/448 (40.6%)
# Score: 393.0
#
#
#=======================================
BSNT_00761___ 1 ----------------ATGTCCAAGATGCAAAACTTGCTCGCCATCGCAA 34
||.||||||| .|||.|| ||||||
BPUM_1228 1 TTGATTTCAAAGGTGAATATCCAAGA---GAAATTT--------TCGCAA 39
BSNT_00761___ 35 ATGAA---------GTCAA----AGAA-AAGCACGCCAATTT------TT 64
||.|| | || |||| ||| | ||
BPUM_1228 40 ATAAATGATTATTGG--AACCCTAGAATAAG----------TGGAGAATT 77
BSNT_00761___ 65 CAAT--CTCAGAGGTCAACGACCACTGCGTGCGCCTTGCGGTGT-----T 107
.||| ||||.|..|.|| |.|| || |
BPUM_1228 78 GAATGACTCATACATGAA-----AATG---------------GTAAAAAT 107
BSNT_00761___ 108 TACGGGAGAAT--ATGACTGGCACCATCACCCTGACTCA----GACGAAT 151
||.|||.|||| || .||| |||||||.||| |.| ||.|||.
BPUM_1228 108 TAAGGGTGAATTCAT--TTGG---CATCACCATGA-TGATGAGGATGAAA 151
BSNT_00761___ 152 TGTTTATTGTTCTTG--AAGGGGAGCTGCTGATCGATTTTAAGGACAAAG 199
||||..|||| .|| |||||.|.||..|.|||..|||||.|||.|.||
BPUM_1228 152 TGTTCTTTGT--ATGGAAAGGGAATCTAGTCATCCGTTTTAGGGATAGAG 199
BSNT_00761___ 200 AAACCGCG---------------------GTGCT--CAAAA-CAAATGA- 224
|||..||| |||.| ||||| .||.|||
BPUM_1228 200 AAATAGCGCTTCATGAAGGAGAATTTCTTGTGATTCCAAAAGGAATTGAA 249
BSNT_00761___ 225 ---CAGCC---TGCTGATCCCGAAAGGCACGGTTCACCGCACACGCTCTT 268
||||| ||||||....||| ||| ||...||||||
BPUM_1228 250 CATCAGCCAGTTGCTGAAGAAGAA-------GTT-----CATTTGCTCTT 287
BSNT_00761___ 269 ACGT----CAGA----ACGGTAAATCTCTG----TGTGGAGCATAAACAA 306
|..| ||.| |||.|||| |.|.| |||||...||.|||
BPUM_1228 288 AATTGAACCAAAAACGACGCTAAA-CACGGGGAATGTGGTCAATGAAC-- 334
BSNT_00761___ 307 GCCGAAACCGT----CATC--------ATAGAGGAGCAGCCATGCTAA 342
.|||.|| |.|| ||.||.|| |.||||.
BPUM_1228 335 ----GAACTGTTTCGCTTCCTGAACGAATGGATGA------ACGCTAG 372
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