Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02229 and BPUM_1219
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:41
# Commandline: needle
# -asequence dna-align/BSNT_02229___ykoG.1.24716.seq
# -bsequence dna-align/BPUM_1219___ykoG.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02229___ykoG-BPUM_1219___ykoG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02229___ykoG-BPUM_1219___ykoG.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02229___ykoG
# 2: BPUM_1219___ykoG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 727
# Identity: 473/727 (65.1%)
# Similarity: 473/727 (65.1%)
# Gaps: 80/727 (11.0%)
# Score: 1401.0
#
#
#=======================================
BSNT_02229___ 1 TTGGAAAAAGGACACATATTAATTGTGGAAGATGAAGAAAAAATCGCCAG 50
.||.|.|||||..|.|||.|..|.||.|||||||||.|.|||||.||.||
BPUM_1219___y 1 ATGAACAAAGGGAAGATACTCGTAGTCGAAGATGAAAAGAAAATTGCAAG 50
BSNT_02229___ 51 GGTTCT-TCAGCTTGAATTGGAATATGAAGGATA-CAGCGTCACGATCAA 98
|||.|| ||| ||.||..|..|.||||||||.|| .|| ||.|||.||||
BPUM_1219___y 51 GGTGCTGTCA-CTAGAGCTTCAGTATGAAGGGTATGAG-GTGACGGTCAA 98
BSNT_02229___ 99 ACACAATGGCACAGAAGGTCTTGATGC---GGCAGCGGAAGGCGGGTATT 145
|.|.|..||.|.|||.||.|||.|.|| .|.||..|||.|| ||
BPUM_1219___y 99 AGAGACAGGAATAGATGGACTTCAGGCTTTAGAAGAAGAAAGC-----TT 143
BSNT_02229___ 146 C--CTTGGTGCTTCTTGATGTCATGCTTCCGGGGCTTAGCGGACTGGAAG 193
| .||||||||.||||||||.||||||||.|...|.|||||.||.||||
BPUM_1219___y 144 CGATTTGGTGCTGCTTGATGTTATGCTTCCAGAATTAAGCGGTCTTGAAG 193
BSNT_02229___ 194 TGCTGCGCCG----CTTGAGAAAAACGGATTCGCAGACACCGGTCATATT 239
|||||.|..| |.|.|||.|| ||.||..|||||| ||||
BPUM_1219___y 194 TGCTGAGAAGAGTTCGTAAGACAA----ATACGGCGACACC-----TATT 234
BSNT_02229___ 240 AT-----TAACGGCGCGAGACAGTATTCCTGATAAGGTAACAGGTCTGGA 284
|| |.||.||..||||.|||.|.|||||||||||||..||.||.||
BPUM_1219___y 235 ATGTTGATTACAGCAAGAGATAGTGTGCCTGATAAGGTAAGTGGGCTTGA 284
BSNT_02229___ 285 CATCGGTGCAAATGACTATGTCACCAAGCCGTTTGAAATCGAGGAATTGC 334
..|.||.||.|||||.|||.|.||.|||||.|||||.||.||.|||||..
BPUM_1219___y 285 TCTTGGAGCGAATGATTATATTACAAAGCCTTTTGACATAGAAGAATTAT 334
BSNT_02229___ 335 TTGCGAGAATCAGGGCGGCGCTGCGGCA----AAATGGAACAAAAACTG- 379
|.|||.||||..|.|| ||| |.||.|||.|.|||| |
BPUM_1219___y 335 TAGCGCGAATTCGTGC---------GCAACTCAGATTGAATATAAAC-GA 374
BSNT_02229___ 380 -----AAGATATCGGCACCTTTCTTA-CATATGACGATTTGCGGGTGAAC 423
||||.|..|..||....||.| |||| |..|||||....||.|||
BPUM_1219___y 375 GCAACAAGAGAAGGAGACAGAGCTGAGCATA-GCAGATTTAACTGTCAAC 423
BSNT_02229___ 424 GAAAAAACCCGTGAAGTGAGACGCGGAGACAAAG---AGG--------TG 462
||.||||| || ||||| |.|||||| ||| |.
BPUM_1219___y 424 GAGAAAAC-----AA--GAGAC----ATACAAAGGGCAGGTCAAATGCTT 462
BSNT_02229___ 463 GAATTAACGCCGCGGGAATTTGATCTGCTCGTCTATATGCTAAAGCATCC 512
|||.|.||||||.|.||||.|||.|||||.|||.|..||||.||.||||.
BPUM_1219___y 463 GAACTCACGCCGAGAGAATATGACCTGCTTGTCCACTTGCTGAAACATCA 512
BSNT_02229___ 513 GCAGCAAGTGCTGACACGGGAGCAAATTCTA--AGCTCAGTATGGGGATT 560
||||||||||||.|||.|.||.||..||.|| |||| ||.|||||.||
BPUM_1219___y 513 GCAGCAAGTGCTCACAAGAGATCAGCTTTTAACAGCT--GTTTGGGGTTT 560
BSNT_02229___ 561 TGATTATATCGGTGATACAAATGTCGTGGACGTCTACATAAGATACATCA 610
|||||||.|.||.|||||.||.||.|||||.|||||.||..|.||..|.|
BPUM_1219___y 561 TGATTATTTTGGCGATACGAACGTGGTGGATGTCTATATCCGTTATTTAA 610
BSNT_02229___ 611 GAAAAAAACTGGACTATCCTTACGAAAAACAGCTGATCCATACGATTCGC 660
|.||||||.|.||.||.||.|.|||||||||.|||||.||.||..|..|.
BPUM_1219___y 611 GGAAAAAAGTCGATTACCCATTCGAAAAACAACTGATTCACACAGTGAGA 660
BSNT_02229___ 661 GGGGTCGGCTATGCCATTAAGGGGTAA 687
||.||.||.||||..||.||.||.|||
BPUM_1219___y 661 GGTGTGGGTTATGTGATGAAAGGATAA 687
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