Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02220 and BPUM_1217

See Amino acid alignment / Visit BSNT_02220 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:41
# Commandline: needle
#    -asequence dna-align/BSNT_02220___ispA.1.24716.seq
#    -bsequence dna-align/BPUM_1217___ispA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02220___ispA-BPUM_1217___ispA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02220___ispA-BPUM_1217___ispA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02220___ispA
# 2: BPUM_1217___ispA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 988
# Identity:     699/988 (70.7%)
# Similarity:   699/988 (70.7%)
# Gaps:          56/988 ( 5.7%)
# Score: 2392.5
# 
#
#=======================================

BSNT_02220___      1 ATGAATGGTGAAATCCGCTTGATCCCGTAT---GTGA---CGAATGAGCA     44
                     |||||.||||||||.|||||.||.||||||   ||.|   |.||||    
BPUM_1217___i      1 ATGAAAGGTGAAATTCGCTTAATTCCGTATGAAGTAAAAGCCAATG----     46

BSNT_02220___     45 GATCATGGATGTAAACGAGCTTCCTGAGGGCATTAAAGTGATTAAGGCGC     94
                       |.|||||.|..||.|||...||.||..|.|||.|.|.||||||.||.|
BPUM_1217___i     47 --TGATGGAAGCGAAAGAGACGCCGGAAAGTATTCAGGAGATTAAAGCAC     94

BSNT_02220___     95 CAGAAATGTGGGCA---------AAAGGGGTAAAAGGCAAAAATATTAAA    135
                     |.|||.|.|||.||         |||||   ||||||||.||..|     
BPUM_1217___i     95 CCGAACTTTGGTCAAGTGGCTTCAAAGG---AAAAGGCATAACCA-----    136

BSNT_02220___    136 GTTGCTGTATTAGACACGGGCTGCGACACA-AGCCACCCTGATTTAAAAA    184
                      |||||||..|.||.||.||.||||||||| || ||.||.||.||||||.
BPUM_1217___i    137 -TTGCTGTCCTTGATACAGGTTGCGACACAGAG-CATCCCGACTTAAAAG    184

BSNT_02220___    185 ATCAAATCATCGGCGGAAAGAACTTCACGGATGACGACGGCGGCAAG---    231
                     ||||.||.|||||.||.||.|||||.||.|||||.|||..|||  ||   
BPUM_1217___i    185 ATCAGATTATCGGAGGTAAAAACTTTACCGATGATGACAACGG--AGATG    232

BSNT_02220___    232 --GAAGATGCGATTTCCGACTACAACGGACACGGCACACACGTCGCCGGA    279
                       |||.|||.||   ..|||||||||||.||.||.||.||.||.||.|||
BPUM_1217___i    233 CTGAAAATGTGA---AAGACTACAACGGGCATGGTACCCATGTTGCGGGA    279

BSNT_02220___    280 ACGATTGCAGCTAATGATTCAAACGGAGGCATTGCCGGAGTCGCGCCTGA    329
                     ||||||||.||.|..|||..|||.||.||.|||...||.||.||.|||||
BPUM_1217___i    280 ACGATTGCTGCAACGGATCAAAATGGTGGAATTTTAGGGGTTGCTCCTGA    329

BSNT_02220___    330 GGCAAGCCTATTGATTGTGAAGGTTCTTGGCGGCGAGAATGGCAGCGGAC    379
                     .||||..||..||||.|||||.|||||||||||.||.||.||||||||..
BPUM_1217___i    330 AGCAAAGCTGCTGATCGTGAAAGTTCTTGGCGGTGAAAACGGCAGCGGGA    379

BSNT_02220___    380 AATACGAATGGATAATTAACGGCATCAACTACGCGGTGGAACAGAAAGTC    429
                     |||||||||||||.|||||.|||||||||||.||.|..||.|||||.||.
BPUM_1217___i    380 AATACGAATGGATCATTAATGGCATCAACTATGCCGCAGAGCAGAAGGTG    429

BSNT_02220___    430 GACATCATCTCAATGTCCCTTGGAGGGCCAAGCGATGTGCCAGAGCTGGA    479
                     ||.||.||.||.|||||.||.||.||.||||||.|||.|||.|...|..|
BPUM_1217___i    430 GATATTATTTCTATGTCTCTCGGTGGTCCAAGCAATGAGCCTGCCTTACA    479

BSNT_02220___    480 AGAAGCAGTGAAAAACGCAGTCAAAAACGGAGTGCTTGTCGTTTGTGCAG    529
                     .|||||..|..|||||||.||.||||.|||.||.|||||.||.||.||||
BPUM_1217___i    480 GGAAGCCATTCAAAACGCGGTGAAAAGCGGTGTACTTGTTGTGTGCGCAG    529

BSNT_02220___    530 CGGGAAATGAAGGTGACGGCGACGAACGCACAGAAGAGCTTTCCTACCCC    579
                     |.|||||||||||.|||||.|||||.||.||.||||||.|.||||||||.
BPUM_1217___i    530 CAGGAAATGAAGGAGACGGAGACGAGCGTACGGAAGAGTTCTCCTACCCA    579

BSNT_02220___    580 GCAGCTTATAATGAAGTGATTGCAGTTGGATCTGTTTCTGTAGCGCGAGA    629
                     |||||.||.||||||||.|||||.||.||.|||||.||..|.||..||||
BPUM_1217___i    580 GCAGCATACAATGAAGTCATTGCCGTCGGCTCTGTCTCACTTGCAAGAGA    629

BSNT_02220___    630 ATTATCAGAATTTTCTAACGCGAATAAAGAGATTGACCTTGTGGCACCAG    679
                     ||..||.|||||.||.|||||.||||||||.||.|||||.||.||.||||
BPUM_1217___i    630 ATCCTCTGAATTCTCCAACGCCAATAAAGAAATCGACCTCGTTGCTCCAG    679

BSNT_02220___    680 GAGAAAACATCTTATCCACCCTTCCCAACAAGAAGTACGGTAAGCTGACC    729
                     |||||.||||.||||||||.||.||.|||.|.||.|||||.|..||.||.
BPUM_1217___i    680 GAGAAGACATTTTATCCACTCTCCCTAACCATAAATACGGCAGACTAACA    729

BSNT_02220___    730 GGCACTTCAATGGCTGCCCCTCATGTCAGCGGTGCGCTTGCTTTAATCAA    779
                     |||||.||.|||||.||||||||.||.||||||||.||.||..|.||.||
BPUM_1217___i    730 GGCACATCGATGGCCGCCCCTCACGTAAGCGGTGCACTAGCCATTATTAA    779

BSNT_02220___    780 AAGCTAT---GAAGAAGAATCATTTCAAAGAAAGCTTTCTGAATCTGAGG    826
                     ||   ||   |||||||||.|.||.||..|.|||||.||.||..||||||
BPUM_1217___i    780 AA---ATGCCGAAGAAGAAGCGTTCCAGCGCAAGCTGTCAGAGCCTGAGG    826

BSNT_02220___    827 TTTTCGCACAGCTAATCCGCAGGACACTTCCTCTTGATATTGCA----AA    872
                     |.|..||.||.||..||.|.||.||.||.||.||..|    |||    ||
BPUM_1217___i    827 TCTATGCTCAACTTGTCAGAAGAACCCTACCACTGAA----GCAATCGAA    872

BSNT_02220___    873 AACGCTGGCAGGCAATGGATTCCTGTATTTAACAGCTCCTGATGAGCTCG    922
                     |.|.||.|.|||.||||||||..|.||||||||.||.|||||||.|||..
BPUM_1217___i    873 AGCCCTCGTAGGGAATGGATTTTTATATTTAACTGCACCTGATGTGCTTT    922

BSNT_02220___    923 CAGAAAAAGCAGAGCAATCACATTTGTTGACCCTATAA    960
                     .||||||..||..|.||.||.||.|.||..|.||||||
BPUM_1217___i    923 TAGAAAAGACATTGGAAGCAGATCTTTTATCTCTATAA    960


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02220 and BPUM_1217

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
