Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02210 and BPUM_1212

See Amino acid alignment / Visit BSNT_02210 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:40
# Commandline: needle
#    -asequence dna-align/BSNT_02210___ykmA.1.24716.seq
#    -bsequence dna-align/BPUM_1212___ohrR.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02210___ykmA-BPUM_1212___ohrR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02210___ykmA-BPUM_1212___ohrR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02210___ykmA
# 2: BPUM_1212___ohrR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 476
# Identity:     302/476 (63.4%)
# Similarity:   302/476 (63.4%)
# Gaps:          61/476 (12.8%)
# Score: 894.5
# 
#
#=======================================

BSNT_02210___      1 ATGGAAAATAAATTTGATCATATGAAATTGGAGAATCAGCTTTGTTTTTT     50
                     |||..||||.||||.||.||||||||..||||.||||||||||||||.||
BPUM_1212___o      1 ATGACAAATGAATTCGAACATATGAAGCTGGAAAATCAGCTTTGTTTCTT     50

BSNT_02210___     51 GCTATATGCGAGTTCGCGGGAAATGATAAAGCAATACAAGCCTCTGCTTG    100
                     |.|||||||.|||||..|.||.||||..|||||.||.||.||..|..|.|
BPUM_1212___o     51 GTTATATGCAAGTTCAAGAGAGATGACGAAGCAGTATAAACCGTTATTAG    100

BSNT_02210___    101 ATAAGCTGAATATAACATACCCCCAATATTTGGCTTTGCTTTTGTTATGG    150
                     |..||.|..|.||.||.||.||.|||||||||||..|||||||.||.|||
BPUM_1212___o    101 AAGAGTTAGACATTACGTATCCGCAATATTTGGCACTGCTTTTATTGTGG    150

BSNT_02210___    151 GAACACGAAACGCTTACTGTCAAAAAAATGGGCGAACAGCTGTATTTAGA    200
                     ||.||.|.||...|.|.|||.||||..|||||.||||...|.||||||||
BPUM_1212___o    151 GAGCATGGAAAATTAAATGTGAAAACGATGGGAGAACTTTTATATTTAGA    200

BSNT_02210___    201 TTCAGGAACGCTCACTCCTATGCTTAAACGAATGGAACAACAGGGTTTGA    250
                     .||.||.||.|||||.||||||||.|||||.|||||.|||.|.|||.|.|
BPUM_1212___o    201 CTCCGGTACACTCACACCTATGCTGAAACGGATGGAGCAAAACGGTCTCA    250

BSNT_02210___    251 TTA----CGAGAAAAAGATCAGAAGAGGATGAGCGGTCCGTGTTGATCAG    296
                     |.|    ||||    .|.||..||||||||||.||.||.|||...||..|
BPUM_1212___o    251 TCATCCGCGAG----CGCTCGAAAGAGGATGAACGTTCTGTGCAAATTCG    296

BSNT_02210___    297 CCTGACAGAGGACGGAGCGTTATTAAAGGATAAAGCGGTTGACATTC---    343
                     ..|.||.||..|.||.|.|..|.||||.||.||.||...||.|||||   
BPUM_1212___o    297 TTTAACGGAATATGGCGAGCAACTAAAAGAGAAGGCTACTGCCATTCCAT    346

BSNT_02210___    344 --CAGAGACAATTCTGGGGCTCTCAAAGCAG-TCTGGGGAGGATCTCAAA    390
                       ||||..| .|||||||.|     |.|||| ||      |||   |.||
BPUM_1212___o    347 TTCAGATGC-TTTCTGGGAC-----AGGCAGATC------GGA---CGAA    381

BSNT_02210___    391 CAGTTAAAATC------CGC-TCTATATACATTGCTGGA-----------    422
                     .||||||||.|      ||| |||       ||||..||           
BPUM_1212___o    382 GAGTTAAAAACATTGCGCGCGTCT-------TTGCATGAGCTTTTGCAAA    424

BSNT_02210___    423 ----AACACTTCATCAAAAAAATTGA    444
                         |||||  .||| ||||...|||
BPUM_1212___o    425 AATTAACAC--AATC-AAAAGGCTGA    447


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