Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02207 and BPUM_1211

See Amino acid alignment / Visit BSNT_02207 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:40
# Commandline: needle
#    -asequence dna-align/BSNT_02207___yklA.1.24716.seq
#    -bsequence dna-align/BPUM_1211___ohrA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02207___yklA-BPUM_1211___ohrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02207___yklA-BPUM_1211___ohrA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02207___yklA
# 2: BPUM_1211___ohrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 459
# Identity:     321/459 (69.9%)
# Similarity:   321/459 (69.9%)
# Gaps:          63/459 (13.7%)
# Score: 1083.5
# 
#
#=======================================

BSNT_02207___      1 ATGAGTCAGCCA----TTATTTACAGCAACTGTTTCAGCGGTAGGAGGAA     46
                     ||  |||||  |    ||||||||.|||||.||||||||.||.|||||||
BPUM_1211___o      1 AT--GTCAG--AAGTTTTATTTACTGCAACGGTTTCAGCTGTCGGAGGAA     46

BSNT_02207___     47 GAGAAGGAAAGGTCATTTCATCAGACCGCGTTCTTGAGCTTGATGTCGCA     96
                     |||||||||||||..|||||...||..|.||.|||||||.||||||.|||
BPUM_1211___o     47 GAGAAGGAAAGGTTGTTTCAAATGATGGAGTGCTTGAGCATGATGTAGCA     96

BSNT_02207___     97 ATGCCGGGGACACCAAGAGCAAAGAAATTAGAAAAAGCGACAAATCCAGA    146
                     |||||.||.|||||||||||.||.|||.||||||||||.|||||.|||||
BPUM_1211___o     97 ATGCCTGGAACACCAAGAGCGAAAAAAATAGAAAAAGCAACAAACCCAGA    146

BSNT_02207___    147 GCAGCTGTTTGCAGCAGGTTATGCAGCTTGCTTTGA--CAGCGCCCTGCA    194
                     |||..|.|||||||||||.||..|.||.||.|||||  ||  ||.||.||
BPUM_1211___o    147 GCAATTATTTGCAGCAGGCTACTCTGCATGTTTTGATTCA--GCTCTTCA    194

BSNT_02207___    195 GCTTGTCGCAAGAACAGAACGGGTA---------AAAGTAGAGACAGAGG    235
                     ..|.|||||||||..|||  |.|||         |||||       ||.|
BPUM_1211___o    195 AATGGTCGCAAGACAAGA--GCGTATCCGTTTTGAAAGT-------GAAG    235

BSNT_02207___    236 TTACAGCGAATGTAAGTCT--GTTAAAG--------GATGAAGCGGACCA    275
                     |.|||||..||||.|| ||  ||.||||        ||||  ||      
BPUM_1211___o    236 TAACAGCACATGTGAG-CTTAGTCAAAGACAGTTCAGATG--GC------    276

BSNT_02207___    276 GGGCTACAAGCTTGGTGTGACGCTGCAAGTAAAAGGAGAAGGAGTCAGTG    325
                      ||||.|||.||.||.||.|.|.|..|||||||||||...|||.|| |.|
BPUM_1211___o    277 -GGCTTCAAACTCGGCGTTAAGTTAGAAGTAAAAGGAACTGGAATC-GAG    324

BSNT_02207___    326 C-ATCAGAATTGGAGGCGCTTGTGAAAAAAGCGCACGGCGTCTGCCCGTA    374
                     | |||.|.|||.||.|.||||||..|.|||||.||||||||||||||.||
BPUM_1211___o    325 CAATCTGCATTAGATGAGCTTGTTCATAAAGCACACGGCGTCTGCCCATA    374

BSNT_02207___    375 TTCAAAAGCAACCTC-CGGAAATATTGATGTGACACTTGAAGTTGCTG--    421
                     ||||||||||| ||| .||||||||.||.|| |.|.||  |||.||||  
BPUM_1211___o    375 TTCAAAAGCAA-CTCAAGGAAATATCGAAGT-AGAATT--AGTAGCTGTC    420

BSNT_02207___    422 ----AATAA    426
                         |||||
BPUM_1211___o    421 GCACAATAA    429


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