Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02206 and BPUM_1208
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:40
# Commandline: needle
# -asequence dna-align/BSNT_02206___proA.1.24716.seq
# -bsequence dna-align/BPUM_1208___proA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02206___proA-BPUM_1208___proA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02206___proA-BPUM_1208___proA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02206___proA
# 2: BPUM_1208___proA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1338
# Identity: 863/1338 (64.5%)
# Similarity: 863/1338 (64.5%)
# Gaps: 177/1338 (13.2%)
# Score: 2607.5
#
#
#=======================================
BSNT_02206___ 1 ATGAGTGAAGTTTCTGTAAAAGC----GAAGC-----TTGCGAAAGAAGC 41
||||..||||||..||.|||||| .|||| |.||.||||
BPUM_1208___p 1 ATGAACGAAGTTCTTGAAAAAGCAAAAAAAGCAAGTATAGCCAAAG---- 46
BSNT_02206___ 42 AGCAGCCGAAATGATCATGAAAACAAC--AGCCGAGAAGGATGAGGCGCT 89
|.|||| ||.||.|.|||||||| ||| |.||..|||
BPUM_1208___p 47 ATCAGC-----TGCTCCTAAAAACAACGGAGC--AAAAAAATG------- 82
BSNT_02206___ 90 CAGCCT-------CATTGCAAACGGACTCCGCAAAG-------AACTGGA 125
||||.| ||||||||..|.||| .|||| .||| .|
BPUM_1208___p 83 CAGCTTTACATGCCATTGCAACTGCACT---TAAAGCATCTTCCACT-TA 128
BSNT_02206___ 126 TTTTCTCTTGGCGGAGAATGCAAAA--GACATTGTG--------AACGGA 165
|||..|| |..||||| ||||| || |||| |..|||
BPUM_1208___p 129 TTTAATC---GATGAGAA--CAAAAAGGA---TGTGCAAGCTGCAGAGGA 170
BSNT_02206___ 166 AAAG-AGAATGGTTTAACACCGGACATC----ATTGACCGTCTCACATT- 209
|||| || |.|..|.|.|| ||||||||..|.|||.|
BPUM_1208___p 171 AAAGCAG----------CTCACGCCTTCTGTTATTGACCGGATTACACTT 210
BSNT_02206___ 210 --GGATGAGAAACGTAT--ACGCGATATCGCGGACGCG---GTGGAGCTC 252
.||.|||| |.|| |.|| .|||||.|||||| .|..|.|||
BPUM_1208___p 211 ACAGAAGAGA---GAATTGAAGC--CATCGCAGACGCGACCCTTCAACTC 255
BSNT_02206___ 253 TTAATCGACTTAGCGGACCCAATCGGCGACTCTCTTGAAACGATTGAAAA 302
||..||.||...||||||||.||.||..|..|.|||||.|||.||||
BPUM_1208___p 256 ---ATTCACCTAAAAGACCCAATTGGTGAAACATTAGAAACCATTCAAAA 302
BSNT_02206___ 303 AGAAAACGGCCTGTTTATTGAAAAAATCCGTGTGCCGCTCGGTGTCGTAG 352
|||||||||.||||..||.||||||.|.||||||||.||.||....||.|
BPUM_1208___p 303 AGAAAACGGTCTGTACATCGAAAAAGTACGTGTGCCTCTTGGAACGGTTG 352
BSNT_02206___ 353 GAATGATTTATGAGGCGAGGCCAAACGTCACAGTTGATGCGGCTACCCTT 402
|||||||||||||.||.||.||||||||.||.||.|||||.||.||||||
BPUM_1208___p 353 GAATGATTTATGAAGCAAGACCAAACGTGACCGTAGATGCTGCCACCCTT 402
BSNT_02206___ 403 TGCCTGAAGACAGGGAACGCGGTTGTGCTGCGGGGAAGCTCCTCAGCCAT 452
||..||||.||.|||||.||.|||.|.||.||.||.|||||.||.||.||
BPUM_1208___p 403 TGTTTGAAAACTGGGAATGCTGTTATTCTTCGCGGGAGCTCTTCTGCTAT 452
BSNT_02206___ 453 CCACAGCAACAAAGCGCTCGTCAGTGTCATTCACAGAGCACTTGAGCA-A 501
.||.||.||.||||||.|.||.|..||.||.||...|||.|||.| || |
BPUM_1208___p 453 TCATAGTAATAAAGCGATTGTGAAAGTGATCCATGAAGCGCTTCA-CACA 501
BSNT_02206___ 502 TCAGCGCTTCCGATTCACGCTGTGCAGCTGATTGAGGATACGAGCAGAGA 551
.|||...||||..|..||..||||||..|.|||||.|||||..|..|.||
BPUM_1208___p 502 ACAGATATTCCAGTAGACAGTGTGCAATTAATTGAAGATACAGGTCGTGA 551
BSNT_02206___ 552 GACAGCAAAAGAGCTCTTTACGTTAAATGATGGTTTAGACGTATTGATTC 601
.||.||.|||..|||.||.||.||||||||...|.|.||.||..|.||||
BPUM_1208___p 552 AACGGCGAAAACGCTGTTCACTTTAAATGAATATCTGGATGTCCTCATTC 601
BSNT_02206___ 602 CGCGCGGAGGCAAGAAACTGATTGATCTCGTTGTGAGAGAATCAACAGTT 651
|||||||.||.||.||..|.||||||||.||.||||||||.||.||.||.
BPUM_1208___p 602 CGCGCGGTGGGAAAAATTTAATTGATCTTGTCGTGAGAGAGTCTACCGTG 651
BSNT_02206___ 652 CCTGTATTAGAAACGGGAGCAGGAAACTGCCACATATTCATTGACGAAAC 701
||.||..|.||.||.||.|||||.|||||.||.||.|.||||||.|||||
BPUM_1208___p 652 CCAGTGCTTGAGACAGGTGCAGGGAACTGTCATATCTACATTGATGAAAC 701
BSNT_02206___ 702 AGCCAAACCTCAAATGGCAGAAAAGGTTGTCGTAAATGCCAAAACTCAGC 751
|||.|||....|||||||.||..||.||||..|.|||||.|||||.||..
BPUM_1208___p 702 AGCGAAATACGAAATGGCTGAGCAGATTGTGCTGAATGCTAAAACCCAAA 751
BSNT_02206___ 752 GCCCTTCTGTATGCAACGCGATTG-AATCATTGCTGATTCACAAGGCTTG 800
|.||.|||||.||||||||.||.| ||.||||| |.|||||..|..|.||
BPUM_1208___p 752 GGCCATCTGTTTGCAACGCAATCGAAAGCATTG-TCATTCATGAAACATG 800
BSNT_02206___ 801 GGCAAGACAGCACGGGAAAGA-ATTGC----------TGGACCAGC---- 835
||||| |||.| ||.|| |.|| |||
BPUM_1208___p 801 GGCAA-----------AAACATATGGCGCTTCGTTATTTGA--AGCCCTT 837
BSNT_02206___ 836 --TGGAAAACGCGGGAGTTGAAATTCGGGGTGATGAATTGGTATGTGAAC 883
||.||| .||.||.||.||.|||||.||||||...|||||||..|
BPUM_1208___p 838 CATGCAAA----TGGGGTAGAGATACGGGGCGATGAAGCTGTATGTGCCC 883
BSNT_02206___ 884 T------TCATCCTTCA--AGCAAACAAGCATCAAAAGAAGATTGGGAAA 925
| |..|.||||| |||.| |.|.||||||.|..||||
BPUM_1208___p 884 TTGCGCCTAGTGCTTCATTAGCTA--------CTACAGAAGACTATGAAA 925
BSNT_02206___ 926 CCGAATTCTTAGCGCCTGTCCTCAGCGTAAAAACGGTTGAAAACGTCCAA 975
|.||.||.|||||.||..|..||||..|.||||..||.||.|||.|..||
BPUM_1208___p 926 CAGAGTTTTTAGCACCGATTGTCAGTATTAAAATCGTAGATAACATAGAA 975
BSNT_02206___ 976 GAAGCTGTGAAGCATATCCAACAATACG----GCACCAATCATTCTGAAG 1021
|||||..|..|||||||.||| ||| ||.||||.||.||.||||
BPUM_1208___p 976 GAAGCGATACAGCATATTCAA----ACGTATAGCTCCAAGCACTCCGAAG 1021
BSNT_02206___ 1022 CGATTTTAACTGAAAATGACAAAAACGCAGCATATTTTC-AAACGGCTGT 1070
||||..|.||.||||||||..|||||||..|| .||||| .|||.|||||
BPUM_1208___p 1022 CGATCATTACGGAAAATGATCAAAACGCGTCA-CTTTTCTTAACAGCTGT 1070
BSNT_02206___ 1071 CGATGCTGCCGCTGTCTATCATAACGCGTCAACCCGCTTTACCGACGGCT 1120
|||||||||.||||||||||||||.||.||.||.||.||.||.||.||||
BPUM_1208___p 1071 CGATGCTGCTGCTGTCTATCATAATGCCTCTACTCGGTTCACAGATGGCT 1120
BSNT_02206___ 1121 TTGAATTCGGCTACGGAGCCGAAATCGGCATCAGCACGCAAAAGCTTCAT 1170
|||||||.|||||||||||.|||||.||.||.|||||.|||||.||.|||
BPUM_1208___p 1121 TTGAATTTGGCTACGGAGCAGAAATAGGAATTAGCACACAAAAACTGCAT 1170
BSNT_02206___ 1171 GCAAGAGGACCGATGGGGCTTCCTGCACTGACTTCTACAAAATACATCAT 1220
|||||||||||.|||||.||.|||||..|.||.|||..|||.|...||||
BPUM_1208___p 1171 GCAAGAGGACCTATGGGTCTACCTGCCTTAACCTCTGAAAAGTTTGTCAT 1220
BSNT_02206___ 1221 ------TAAAGGAACTGGGCAAATCCGTGAAT----AG 1248
|.||||| |||||..|.|||| |
BPUM_1208___p 1221 TCGCGGTCAAGGA------CAAATAAGAGAATCATGA- 1251
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