Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_02203 and BPUM_1203

See Amino acid alignment / Visit BSNT_02203 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:40
# Commandline: needle
#    -asequence dna-align/BSNT_02203___ykkD.1.24716.seq
#    -bsequence dna-align/BPUM_1203___ykkD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02203___ykkD-BPUM_1203___ykkD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02203___ykkD-BPUM_1203___ykkD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02203___ykkD
# 2: BPUM_1203___ykkD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 338
# Identity:     224/338 (66.3%)
# Similarity:   224/338 (66.3%)
# Gaps:          43/338 (12.7%)
# Score: 672.0
# 
#
#=======================================

BSNT_02203___      1 ATGCTGCA-CTGGATCAGTTT----ATTGTGCGCGGGCTGTTTAGAAATG     45
                     |||    | ||||.|   |||    |||| |.||.|||...|||||||||
BPUM_1203___y      1 ATG----AGCTGGCT---TTTACTAATTG-GAGCAGGCATCTTAGAAATG     42

BSNT_02203___     46 GCCGGCGTGGCCCTTATGAATCAATATGCGAAAGAAAAAAGC--GTGAAA     93
                     ....|.|||.||.|.||||||||  ||.|.|||.|.|.||||  ||.|||
BPUM_1203___y     43 CTTTGTGTGACCATGATGAATCA--ATTCCAAAAAGACAAGCATGTCAAA     90

BSNT_02203___     94 TGGGTGCTGTTGA-TCATT---GTTGGTTTTGCCGCTTCATTTTCCTTGC    139
                     |||.|    ||.| |||||   |.|||.||      |||..|.|||||.|
BPUM_1203___y     91 TGGAT----TTTATTCATTGCGGCTGGCTT------TTCGATGTCCTTTC    130

BSNT_02203___    140 TG--------TCGTACGCAATGGAAACCATTCCGATGGGAACGGCTTACG    181
                     ||        ||.|  ||.|||.|.||.|||||||||||||||||.||.|
BPUM_1203___y    131 TGATGTTGTCTCTT--GCGATGAACACGATTCCGATGGGAACGGCGTATG    178

BSNT_02203___    182 CCGTCTGGACAGGAATTGGCACCGCCGGCGGGGCGCTTGTCGGCATCCTC    231
                     ||.|.|||||.|||||.||..|.||.||.||.||..|.|||||.||.||.
BPUM_1203___y    179 CCATTTGGACTGGAATCGGAGCTGCTGGAGGCGCCATGGTCGGTATGCTT    228

BSNT_02203___    232 TTTTACAAGGAGCAGAAAGACGCCAAACGGATCTTCTTTATCGCGTTGAT    281
                     ||||||...|||..||||||.||.|||||.||.||.||||||||.|||||
BPUM_1203___y    229 TTTTACGGAGAGTCGAAAGATGCAAAACGTATTTTTTTTATCGCATTGAT    278

BSNT_02203___    282 TTTATGCT-CAGCGGTTGGTTTGAAAATTCTGTCATAA    318
                     ||||| || |.||.||.||.||||||||..|...||||
BPUM_1203___y    279 TTTAT-CTGCGGCAGTAGGATTGAAAATCATTGAATAA    315


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.