Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02185 and BPUM_1188
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:39
# Commandline: needle
# -asequence dna-align/BSNT_02185___dppE.1.24716.seq
# -bsequence dna-align/BPUM_1188___dppE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02185___dppE-BPUM_1188___dppE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02185___dppE-BPUM_1188___dppE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02185___dppE
# 2: BPUM_1188___dppE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1717
# Identity: 1176/1717 (68.5%)
# Similarity: 1176/1717 (68.5%)
# Gaps: 179/1717 (10.4%)
# Score: 3905.5
#
#
#=======================================
BSNT_02185___ 1 ATGAAACGAGTGAAAAAGCTATGGGGCATGGGTCT-TGCATTAGGACTTT 49
||||.| ||||||..||||..|||..||.| || ||
BPUM_1188___d 1 ATGAGA------AAAAAGGGATGGATCATCAGTATATG----------TT 34
BSNT_02185___ 50 CGTTTGCGCTGATG---------GGGTGCACAGCAAATGAACAGGCCGGA 90
.|||..|..|.||| ||.||.|||||.|||||.||.||.||.
BPUM_1188___d 35 TGTTCACAATCATGCTGCTCGCAGGATGTACAGCCAATGAGCAAGCAGGG 84
BSNT_02185___ 91 AAAGAAGGCAGTCATGATAAGGCAAAAACCAGCGGAGAAAAGGTGCTGTA 140
|||| .||.||.|.|||||.| .||.|||||| ...|||
BPUM_1188___d 85 AAAG--------GATCATCAAGCAAAGA----GGGTGAAAAG--AAAGTA 120
BSNT_02185___ 141 T-----GTAAATAATGAAAATGAACCGACTTCATTCGATCCGCCGATCGG 185
| .|||||||.|||||.||||||||.||.||.|||||.|||||.||
BPUM_1188___d 121 TTAACCTTAAATAACGAAAACGAACCGACGTCGTTTGATCCTCCGATTGG 170
BSNT_02185___ 186 CTTTAATAATGTGTCATGGCA--GCCGTTAAATAACATCATGGAGGGGCT 233
.|||||||||||.||.||||| |.| |.||||||.|.||||||||..|
BPUM_1188___d 171 TTTTAATAATGTATCGTGGCAAGGAC--TCAATAACCTAATGGAGGGATT 218
BSNT_02185___ 234 GACGCGTCTTGGCGAAGATCATGAGCCCGAGCCGGCAATGGCGGAGAAAT 283
.||..|.||....|||.|.||.||.||....||.||||||||.||.||||
BPUM_1188___d 219 AACAAGACTGAATGAAAAGCACGAACCATCTCCTGCAATGGCTGAAAAAT 268
BSNT_02185___ 284 GGTCTGTTTCGAAAGATAATAAAACTTACA-----CATTTACGATTCGGG 328
||....||||.||.|||...|||||.|||| ||||||.|
BPUM_1188___d 269 GGGAGATTTCAAAGGATGGAAAAACGTACACGTTCCATTTAAG------- 311
BSNT_02185___ 329 AAAATGCG----AAATGGACAAACGGAGATCCTGTAACAGCCGGAGACTT 374
|.||| | ||.|||.||||.||.|||||.||.|.|||..|.|||||
BPUM_1188___d 312 -AGATG-GCATCAAGTGGTCAAATGGTGATCCAGTGAAAGCGAGTGACTT 359
BSNT_02185___ 375 CGAATACGCGTGGAAGCGGATGCTTGATCCGAAAAAAGGCGCTTCATCGG 424
.|||||.||||||||||||.|||||||||||||||.|||| ||.||.|
BPUM_1188___d 360 TGAATATGCGTGGAAGCGGCTGCTTGATCCGAAAACAGGC---TCCTCCG 406
BSNT_02185___ 425 CA---TTCCTAGGTTATTTTATTGAAGGCGGCGAAGCATATAACAGCGGG 471
|| |||||||..|||.|.|||||||||||.||.||||.|||||||||.
BPUM_1188___d 407 CATCGTTCCTAGCGTATATGATTGAAGGCGGAGAGGCATTTAACAGCGGA 456
BSNT_02185___ 472 AAAGGGAAAAAAGACGATGTGAAGGTGACGGCAAAGGATGATCGAACCCT 521
|||||.||.|||||.||.||.||.||.|..||..||.||||...|||.||
BPUM_1188___d 457 AAAGGAAAGAAAGAAGACGTTAAAGTTAGCGCTGAGAATGACAAAACGCT 506
BSNT_02185___ 522 TGAAGTTACACTGGAAGCACCGCAAAAATATTT------TCTGAGCGTTG 565
|.|.||.|||||||.|...||||||||||..|| |.|||.||
BPUM_1188___d 507 TAAGGTCACACTGGCATACCCGCAAAAATCGTTCTTAAATATGACCG--- 553
BSNT_02185___ 566 TGTCCAATCCTGCGTATTTTCCGGTAAATGAAAAGGTCG---ATAAAGAC 612
|.||.|||||.|.||||||.||.||||||.||||.| |.||.|||
BPUM_1188___d 554 ---CAAACCCTGCCTTTTTTCCTGTCAATGAACAGGTAGCGAAGAAGGAC 600
BSNT_02185___ 613 AATCCGAAGTGGTTTGC---TGAGGCGGATACATTTGTCGGAAACGGCCC 659
||.||.||| || .||.||..|.||.|||||||||||.||.||
BPUM_1188___d 601 ---CCAAACTGG---GCAAAAGACGCCAAAACCTTTGTCGGAAATGGACC 644
BSNT_02185___ 660 GTTTAAGCTGACGGAATGGAAGCATGATGACAGCATCACAATGGAGAAAA 709
|||.||||||||.||.||||||||||||||.|||.|.||||||.|.||||
BPUM_1188___d 645 GTTCAAGCTGACAGAGTGGAAGCATGATGAGAGCTTTACAATGAAAAAAA 694
BSNT_02185___ 710 GCGACACGTATTGGGA-TAAAGATACAGTGAAGCTTGATAAGGTGAAATG 758
|.||.||||||||||| .|||.|| ||||.|||.|.|||.|.|||||.||
BPUM_1188___d 695 GTGAGACGTATTGGGACGAAAAAT-CAGTTAAGTTAGATCAAGTGAAGTG 743
BSNT_02185___ 759 GGCGATGGTCAGTGACAGAAATACAGATTACCAGATGTTTCAATCAGGGG 808
|..||||.|||||||..||||.|||||.||.||.||||.|||||||||.|
BPUM_1188___d 744 GCTGATGATCAGTGATCGAAACACAGACTATCAAATGTATCAATCAGGAG 793
BSNT_02185___ 809 AACTTGATACCGCTTATGTCCCTGCTGAGCTGAGTGATCAGCTGCT---T 855
|..|.|||||.||.|.||||||.||.||||..|||||..|.||||| .
BPUM_1188___d 794 ATTTAGATACTGCCTTTGTCCCAGCAGAGCAAAGTGAAAATCTGCTAAAA 843
BSNT_02185___ 856 GATCAGGATAACGT-CAATATTGTTGACCAGGCGGGTCTCTATTTCTATC 904
.||.|.||| || ||| ||||..||||||||.||..|.|..||.||||
BPUM_1188___d 844 AATAAAGAT---GTACAA-ATTGAAGACCAGGCTGGATTGTTCTTTTATC 889
BSNT_02185___ 905 GATTTAATGTCAACATGGAGCCATTCCAAAATGAAAACATCAGAAAAGCC 954
|..|.|||||.||||||||.||.||.||||||.||||||||.|.|||||.
BPUM_1188___d 890 GTCTGAATGTAAACATGGAACCTTTTCAAAATAAAAACATCCGCAAAGCA 939
BSNT_02185___ 955 TTTGCGATGGCTGTGGATCAA----GAGGAAATTGTAAAGTACGTCACGA 1000
|||...||||| |||||| .|.||.||.|||.|.||.||.||||
BPUM_1188___d 940 TTTCAAATGGC----GATCAACCCGCAAGATATCGTAGATTATGTGACGA 985
BSNT_02185___ 1001 AAAATAATGAAAAACCGGCGCGCGCCTTTGTATCGCCTGG-------GTT 1043
|||||.|.||.||.||.||.|||||||||||.|||||.|| |.|
BPUM_1188___d 986 AAAATGAAGAGAAGCCAGCACGCGCCTTTGTCTCGCCAGGCATTCTAGAT 1035
BSNT_02185___ 1044 TACGCAGCCTGACGGCAAAGATTTCCGTGAAGCAGGCGGAGA-CTTGATC 1092
| |..|.|||.|.||||||.|..||||.|||||.|| |||| |.
BPUM_1188___d 1036 T-------CAAAAGGCGAGGATTTCAGAAAAGCTGGCGGTGATCTTG-TG 1077
BSNT_02185___ 1093 AAGCCTAACGA-AAGCAAAGCGAAGC-----AGCTGCTAGAAAAGGGCAT 1136
||| ||||| ||| ||.||||| ||||..||||||||||..|
BPUM_1188___d 1078 AAG---AACGATAAG---AGTGAAGCTGCAAAGCTATTAGAAAAGGGGCT 1121
BSNT_02185___ 1137 GAAGGAAGAAAACTATAATAAGCTTCCTGCGATCACGCTTACTTACAGCA 1186
|||.|||||.||||||...||.||.||.||..||||..|.||.|||||.|
BPUM_1188___d 1122 GAAAGAAGAGAACTATTCAAAACTGCCAGCCGTCACATTGACATACAGTA 1171
BSNT_02185___ 1187 CAAAGCCGGAGCATAAAAAGATTGCCGAAGCTATTCAGCAAAAATTGAAA 1236
|||||||.|||.||||.||.|..||.|||||.||.|||||..|..|||||
BPUM_1188___d 1172 CAAAGCCTGAGAATAAGAAAAAAGCTGAAGCCATCCAGCAGCAGCTGAAA 1221
BSNT_02185___ 1237 AATAGC-CTTGGAGTCGATGTAAAGCTGGCCAATATGGAATGGAACGTAT 1285
.| ||| ||.||.||.|||||.|||||.|||||.||||||...||.||||
BPUM_1188___d 1222 GA-AGCGCTAGGTGTAGATGTGAAGCTTGCCAACATGGAAGCCAATGTAT 1270
BSNT_02185___ 1286 TTTTAGAGGATCAAAAAGCGCTGAAATTCCAATTCTCTCAAAGCTCATTT 1335
||...||.||||||||.||.||||||||.||||||||.|||||.||||||
BPUM_1188___d 1271 TTGCTGAAGATCAAAAGGCACTGAAATTTCAATTCTCACAAAGTTCATTT 1320
BSNT_02185___ 1336 TTGCCTGATTATGCAGACCCTATCAGTTTTCTGGAAGCCTTTCAAACGGG 1385
||..|.||.||||||||.||.||||.|||.||.|||..|||||||||.||
BPUM_1188___d 1321 TTAGCAGACTATGCAGATCCGATCAATTTCCTAGAAAGCTTTCAAACAGG 1370
BSNT_02185___ 1386 TAATTCGATGAACCGCACAGGCTGGGCCAATAAAGAATAC----GATCAG 1431
.|||.|.||||||||.|||||.|||.| |||..|||| |||||.
BPUM_1188___d 1371 GAATGCCATGAACCGGACAGGGTGGTC----AAACGATACCTATGATCAA 1416
BSNT_02185___ 1432 CTGATCAAACAGGCGAAAAATGAAGCCGATGA-------AAAAACACGGT 1474
|||||.|||.||||.|...|.|||||.||.|| |.|||||...|
BPUM_1188___d 1417 CTGATTAAAAAGGCAAGTCAGGAAGCAGACGAGCAAAAGAGAAACAACAT 1466
BSNT_02185___ 1475 TCTCTCTTATGCATCAAGCTGAAGAG---CTGCTCATCAATGAAGCGCCG 1521
||| |||.|.||.|||| ||.|||||..|.|||||.|||
BPUM_1188___d 1467 TCT----------TCATGATGCAGAGGCACTTCTCATTGAAGAAGCACCG 1506
BSNT_02185___ 1522 ATCATCCCGGTTTATTTTTATAATCAGGTTCACCTGCAAAATGAACAAGT 1571
|||||||||.||.||||||||||.||.|||||..|.|||||.|||...||
BPUM_1188___d 1507 ATCATCCCGATTCATTTTTATAACCAAGTTCATTTACAAAAAGAAGGCGT 1556
BSNT_02185___ 1572 AAAGGGAATTGTCCGTCACCCTGTCGGCTATATCGATTTAAAATGGGC-- 1619
.|||||.|||||.|||||||||||.||.|||||||||||.||||||||
BPUM_1188___d 1557 GAAGGGGATTGTTCGTCACCCTGTTGGGTATATCGATTTGAAATGGGCGC 1606
BSNT_02185___ 1620 ----AGATAAAAACTGA 1632
||||..|||.|||
BPUM_1188___d 1607 AAGTAGATGGAAAATGA 1623
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