Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02180 and BPUM_1183
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:38
# Commandline: needle
# -asequence dna-align/BSNT_02180___proG.1.24716.seq
# -bsequence dna-align/BPUM_1183___proC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02180___proG-BPUM_1183___proC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02180___proG-BPUM_1183___proC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02180___proG
# 2: BPUM_1183___proC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 931
# Identity: 516/931 (55.4%)
# Similarity: 516/931 (55.4%)
# Gaps: 221/931 (23.7%)
# Score: 1192.0
#
#
#=======================================
BSNT_02180___ 1 ATGGA-ACAGATTGGATTGATTGGATATGGCAGCATGGCGGATATGAT-- 47
.|||| ||| ||||||.|.|||||||||||.||||||||.||||||||
BPUM_1183___p 1 GTGGAGACA-ATTGGAATCATTGGATATGGAAGCATGGCAGATATGATGG 49
BSNT_02180___ 48 CGCCAGACAGCTGTTGAAACATGAA-----CAA-----ATAAAAGAGAAT 87
.||.|.|..| ||||.||.|.||| ||| ||.|| |..||
BPUM_1183___p 50 TGCAAAAATG--GTTGGAAAAAGAAGTACTCAATGCCCATCAA--ATCAT 95
BSNT_02180___ 88 GAGCTATTTATTGAGACGAG-AACAAAGGGGGAGCGGCTGCGGGCACTCC 136
||.|.| ||.| |||.|.| |||| ||.||.||||....|||
BPUM_1183___p 96 GATCCA--TACT-AGAAGTGAAACA------GACCGCCTGCTTCAACT-- 134
BSNT_02180___ 137 TGTCAGATTATCCAAACGTATCGGCTGATCCGTTGGAGAATTGGGCAAAT 186
|||| .||.||| ||| .||||.| ||||
BPUM_1183___p 135 ------------CAAA--GATAGGC--ATC-----AAGAAAT----AAAT 159
BSNT_02180___ 187 ACGTGCCAATTGA------------------------TTTTGATATGCGT 212
|..|||..|||.| ||||.||.|||||
BPUM_1183___p 160 ATCTGCTCATTAAACGAACTTTCTGCATGTGATGTACTTTTTATCTGCGT 209
BSNT_02180___ 213 CCCGCCG---------CTCCATGTCATCGA--AACAATGCGCCGTCTGCA 251
.|||||| ||..||||..|||| ||| .|||.||.|||
BPUM_1183___p 210 ACCGCCGCTTGCTGTACTTGATGTACTCGATCAAC----TGCCTTCAGCA 255
BSNT_02180___ 252 CCCGTATGTGAACAGAAATACTCACATCGTATCCATAGCTGCCGGTGTGC 301
.||..||..|..| ||||| ||.||..||||.||.|.||||.
BPUM_1183___p 256 GCCAAATCGGTTC----ATACT------GTGTCAGTAGCCGCGGCTGTGA 295
BSNT_02180___ 302 CGCTGCGTC---TTTTGGAGGCAGA-AACAGAAGCGGGTATCTCACGTGT 347
|| |..|.| ||.|..|.|||.| .||..||.| .||.|||.|
BPUM_1183___p 296 CG-TTAGACAAGTTATCAAAGCATACGACTCAACC---AATTTCAAG--- 338
BSNT_02180___ 348 TATTCCTGCCA----TTACGTCCGAAGC----AGAAGCTGGCATCTCACT 389
||.|.|.||| |.||||| ||| .||| |.|||.|.||.||
BPUM_1183___p 339 -ATACATCCCAACGCTCACGTC---AGCTGTTGGAA-CAGGCGTATCCCT 383
BSNT_02180___ 390 TGTCGTTCACAGTGAAGCACTGGCTGCAGAG---AAAAAAGAACGTCTGA 436
.||.|..||..|.||| ||| ||||..||| .||||.|.||||.||.
BPUM_1183___p 384 CGTTGCGCATGGCGAA--ACT-GCTGGGGAGGAAGAAAAGGCACGTTTGC 430
BSNT_02180___ 437 AT-GAATTGTTATCGGTTTTCAGCCGT-------GTTCGAGAAATCAAAG 478
|| | ||...|||||||..| ||.||.|||||..|.|
BPUM_1183___p 431 ATCG--------TCTCCTTTCAGCTTTTAGTATCGTACGTGAAATAGAGG 472
BSNT_02180___ 479 AATCGA--ATGTTGATGCGGCCAGCAATTTAACGAGCTCGGCACCGGGAT 526
|| || |..||||||||||.||.||.||.||.|||||..|.||.||.|
BPUM_1183___p 473 AA--GATCAGTTTGATGCGGCGAGTAACTTGACAAGCTCATCTCCTGGTT 520
BSNT_02180___ 527 TCATAGCCGCAATCTTTGAAGAGCTGGC-ACTGTCTGCCGTCAGAAACAG 575
|.||.||.||..|.||||||||..|||| |..| |.||.||.|||||.||
BPUM_1183___p 521 TTATCGCTGCTCTTTTTGAAGAAATGGCGAAAG-CCGCTGTGAGAAATAG 569
BSNT_02180___ 576 -CAGCCTGTCCAAAGAAGAAGCCTTTGATTTTCTGATTCATTCGCTATAC 624
.|| ||.|||..|||.|||||.|.|||.|||.|.|...||.||||.|..
BPUM_1183___p 570 TGAG-CTTTCCTTAGAGGAAGCGTATGAATTTTTAACATATGCGCTTTTA 618
BSNT_02180___ 625 GGAACTGG-CAAGATGCTGATCGAAAAAAATATGTCTTTCGAGGAGAC-- 671
||.||.|| |||| |.||..|.||| |||||...|
BPUM_1183___p 619 GGCACAGGTCAAG-TCCTTGTAGAA--------------CGAGGCCTCAC 653
BSNT_02180___ 672 ----GCTGGAAC--------GTGTTGCAACCAAAGGCGGAATAACGGGAG 709
||||.||| |.||.||.||.|||||.||.||.||.||||
BPUM_1183___p 654 CTTTGCTGAAACCGTCGATAGAGTGGCGACAAAAGGGGGCATTACAGGAG 703
BSNT_02180___ 710 AGGGAGCTGAGGTGATACA--------CGCCTCTG-TGCCGGACGTTTTT 750
|.||.||.||||||||.|| |.||||.| || |||
BPUM_1183___p 704 AAGGCGCCGAGGTGATTCAAAAGCAGGCACCTCAGATG---------TTT 744
BSNT_02180___ 751 GATGAGGTGTTTGAAAGAACCCTGAAAAAATATGAACTGCTTACAGAACA 800
|||||..|||.|..|..||||.||||.||||||||||..||.|.|..|||
BPUM_1183___p 745 GATGATCTGTATACACAAACCATGAAGAAATATGAACAACTGAAATCACA 794
BSNT_02180___ 801 GGTTGGTAA--------ACAGACATGA---- 819
|.| ||| |||.|||..|
BPUM_1183___p 795 GAT---TAACGAAGCGGACAAACACCACTAA 822
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